- 0003054: [Module ImageLabelCombine] Image Label Combine does not work with multiple label value labelmaps (alexy) - feedback. - 0003075: [Core: Base Code] Can't launch program through symlink (jcfr) - feedback. - 0001301: [Module Annotations] Fiducial size is not changing in slice viewer (nicole) - feedback. - 0002919: [Core: Base Code] Add UseColorNameAsLabel for scalar bar widget (nicole) - feedback. - 0003019: [Core: Base Code] Renaming a node (1) does not update file name and (2) does not update modified status (jcfr) - feedback. - 0002567: [Core: QtTesting] Add screenshot based comparison to test using QtTesting (sankhesh) - feedback. - 0002434: [Module Diffusion] Diffusion Category in Modules's menu (demian) - feedback. - 0002015: [Module DICOM] Checking DICOMSlicerDataBundlePlugin and ""ScalarVolumePlugin every time (pieper) - feedback. - 0002336: [Core: Base Code] Consolidate enum used to specify scalarInvariant operation in DTI (jcfr) - feedback. - 0002952: [Core: Usability] Popup slider range in Volumes GUI is not initialized correctly (sankhesh) - feedback. - 0001848: [Core: Building (CMake, Superbuild)] ImportError: No module named site (jcfr) - feedback. - 0002491: [Core: Building (CMake, Superbuild)] Continuous build configuration error on factory.kitwarein.com for SlicerRT (jcfr) - feedback. - 0002964: [Core: Scripting (Wrapping, Python)] QStandardItem memory management crash (jcfr) - feedback. - 0002687: [Core: MRML] Saving a scene that contains nodes with the same name results in data loss (alexy) - feedback. - 0002445: [Core: Base Code] crash during save - possibly CLI update (finetjul) - feedback. - 0002594: [Core: Base Code] Crash saving scene on windows (jcfr) - feedback. - 0002580: [Core: Command Line Modules (Modules/CLI)] Slicer crashes on using Mask Scalar Volume (millerjv) - feedback. - 0002485: [Module VolumeRendering] mrb does not configure modules properly (finetjul) - feedback. - 0002576: [Core: GUI] It would be good to have a way to turn off/on all models (nicole) - feedback. - 0001859: [Module Diffusion] ResampleDTI does not handle the measurement frame (demian) - feedback. - 0002670: [Core: Base Code] Applying a transform to a ROI (alexy) - feedback. - 0002705: [Core: GUI] harden transform of ROI leads to crash (finetjul) - assigned. - 0002753: [Core: MRML] 3d view bounding box update is not triggered (alexy) - feedback. - 0002658: [Core: Base Code] Unable to open NIfTI nor Analyze75 files which could be opened in previous builds (started in October versions) (pieper) - feedback. - 0002638: [Core: Building (CMake, Superbuild)] Submit bug report to Parallel (jcfr) - feedback. - 0002667: [Core: GUI] Hidden labelmap shows up in the dropdown list in the slice viewers (finetjul) - feedback. - 0002361: [Core: Command Line Modules (Modules/CLI)] resamplescalarvectordwi.exe CLI module does not function in windows (millerjv) - feedback. - 0001732: [Core: Base Code] SceneViews: restore issue (millerjv) - feedback. - 0001878: [Core: Usability] improved options for linkage behavior (fedorov) - feedback. - 0002572: [Module VolumeRendering] crash when running labelmap smoothing, log is with report (finetjul) - feedback. - 0001436: [Module EMSegment] EMSegment issues many warnings (hjmjohnson) - feedback. - 0001563: [Core: GUI] Blending bar is anti-ergonomic (finetjul) - feedback. - 0002037: [Core: GUI] Single-slice volumes are not displayed (alexy) - feedback. - 0002105: [Module Annotations] Jump to fiducial feature (nicole) - feedback. - 0002323: [Core: Building (CMake, Superbuild)] VTK build error on visual studio 2008 (jcfr) - feedback. - 0001904: [Core: GUI] Text entry managed by settings panel resets the cursor to the end of the line edit for each character stroke (jcfr) - feedback. - 0002101: [Core: GUI] switching beteween modules takes long time (finetjul) - feedback. - 0001749: [Core: Command Line Modules (Modules/CLI)] Last GenerateCLP version in github not working (finetjul) - feedback. - 0001966: [Core: Documentation & Wiki] Add disclaimer associated with 32bit on download.slicer.org (mhalle) - feedback. - 0001849: [Core: Building (CMake, Superbuild)] qSlicerWidgetTest2.cxx.o: undefined reference to symbol 'QVTKWidget::QVTKWidget(QWidget*, QFlags<Qt::WindowType>) (domibel) - feedback. - 0001934: [Core: Usability] Download Sample Data produces effect different from Load Volume (pieper) - feedback. - 0001447: [Module Editor] Switching to editor changes my sliceviews if the views are linked. (pieper) - feedback. - 0001814: [Core: Extensions] Discuss with Kitware sysadmin about SVN checkout logs (jcfr) - feedback. - 0001961: [Core: Building (CMake, Superbuild)] Setup mechanism to restart factory on a weekly basis (jcfr) - feedback. - 0001312: [Core: Usability] CLI - When module is entered - WidgetRepresentation should be reset to match associated node (finetjul) - feedback. - 0002454: [Module Editor] Add FastMarching effect to Editor (fedorov) - acknowledged. - 0001964: [Core: Base Code] Factor out code associated with QTCLI widget into a reusable component - acknowledged. - 0002500: [Module DICOM] Make split by content time configurable (pieper) - acknowledged. - 0002287: [Module Editor] Scope missing from editor (pieper) - acknowledged. - 0001619: [Core: Base Code] CLI - BSplineToDeformationField module has no test (fedorov) - acknowledged. - 0001815: [Core: Base Code] Add support for MRC files - acknowledged. - 0002151: [Core: Documentation & Wiki] Document python scripting API (pieper) - acknowledged. - 0001673: [Core: Base Code] Networking in vtkMRMLStorageNode should support multi-threading (pieper) - acknowledged. - 0001984: [Core: Base Code] An option to load bmp/jpegs as scalar and be able to choose between RGB and 8 bit grayscale (finetjul) - acknowledged. - 0002354: [Core: Extensions] Extension manager does not load images from https servers and progress bar never reaches 100% (jcfr) - acknowledged. - 0002728: [Core: GUI] Problem with outlines of label maps in the lightbox view (alexy) - confirmed. - 0002579: [Core: GUI] Transform Widget: easy enhancements for more user-friendly manual registrations (sankhesh) - confirmed. - 0002991: [Core: GUI] Expose qSlicerIOManager::openDialog to python (finetjul) - confirmed. - 0002781: [Core: Documentation & Wiki] Allow Improved presentation of SEM documentation in SlicerGUI (sankhesh) - confirmed. - 0002786: [Module Editor] Eraser not working in Editor (pieper) - confirmed. - 0002288: [Core: Usability] Using the MultiVolumeImporter Slicer steals focus of other windows (Mac) (finetjul) - confirmed. - 0002188: [Core: MRML] Save Data saves only the png's, not the data. (alexy) - confirmed. - 0003125: [Core: MRML] Compressed Nifti files not stored properly in MRML (jcfr) - assigned. - 0003118: [Core: GUI] Slice view does not update when selected volume is changed (jcfr) - assigned. - 0003087: [Core: Command Line Modules (Modules/CLI)] dialogs for CLI output files don't set AcceptMode for saving (jcfr) - assigned. - 0003121: [Module Tractography] FiberBundleLabelSelect tweaks (demian) - assigned. - 0001978: [Module DICOM] Not all series retrieved for some studies (pieper) - assigned. - 0001899: [Core: Usability] Saving and reopening .nrrd problem (pieper) - assigned. - 0001821: [Core: GUI] Big white bar across screen with Slicer Viewer Controller -- and it hides important button (finetjul) - assigned. - 0003017: [Core: Tutorial Testing] Tests do not fail when dependencies are missing (jcfr) - assigned. - 0003105: [Core: GUI] Welcome module needs updating (jcfr) - assigned. - 0002352: [Core: Scripting (Wrapping, Python)] Include more python packages in standard install (jcfr) - assigned. - 0003013: [Core: Base Code] qMRMLLabelComboBox: updateWidgetFromMRML is very slow (jcfr) - assigned. - 0003081: [Core: GUI] when dragging and dropping a dicom file or folder into slicer, the dicom widget should be invoked by default (pieper) - assigned. - 0003038: [Core: Base Code] Cannot enter decimals in image spacing (johan andruejol) - assigned. - 0003092: [Core: Scripting (Wrapping, Python)] Pasting (with the context menu) in the command line invalidate the command (jcfr) - assigned. - 0002788: [Core: Usability] Crosshairs change position on zoom (millerjv) - assigned. - 0002583: [Core: Building (CMake, Superbuild)] Unnecessary python wrapping and recompilation (jcfr) - assigned. - 0003080: [Core: GUI] modified GUI for import into dicom widget (pieper) - assigned. - 0002356: [Core: Usability] "lauch" parameter associated with the Slicer launcher should NOT display splashscreen (jcfr) - assigned. - 0002456: [Core: Base Code] When manually modified fiducial labels do not save correctly (nicole) - assigned. - 0001694: [Core: GUI] there should be a central place to set dimensionality (finetjul) - assigned. - 0002602: [Module VolumeRendering] transfer function is not initialized properly for FA volumes (alexy) - closed. - 0002601: [Core: GUI] W/L of FA volume is not handeld properly. UI in the volume module is not usable. (finetjul) - closed. - 0001888: [Core: GUI] Ensure Capitalization rule is respected all over Slicer (snape) - assigned. - 0002543: [Module Diffusion] Fiber Bundle to Label Map conversion module (pieper) - assigned. - 0002519: [Core: Building (CMake, Superbuild)] Discuss with the community and setup a branchy workflow (jcfr) - assigned. - 0002059: [Core: Building (CMake, Superbuild)] Transition to Git (sankhesh) - assigned. - 0002834: [Core: Base Code] Consolidate svn and git hooks (sankhesh) - closed. - 0002060: [Core: Building (CMake, Superbuild)] Move testing data onto Midas (sankhesh) - feedback. - 0002520: [Core: Building (CMake, Superbuild)] Prepare factory/dashboard script to support branchy workflow (jcfr) - assigned. - 0001907: [Core: Extensions] Icons in "Manage Extensions" are default icons, not extension specific icons (jcfr) - assigned. - 0003032: [Core: Building (CMake, Superbuild)] Report Slicer packaging error on CDash (jcfr) - assigned. - 0003031: [Core: GUI] Saving scene breaks viewers on Linux (millerjv) - assigned. - 0001824: [Core: GUI] Slicer Viewer Controller windows pop up and obscur "Select Folder" when doing 'Destination for all selected' (finetjul) - assigned. - 0001763: [Core: GUI] Slide down menu to select background image and foreground image appears on top of other windows (finetjul) - assigned. - 0001967: [Core: Documentation & Wiki] Improve "slicer.org" page - Easier access to build / download / contribute (mhalle) - assigned. - 0002480: [Core: GUI] When editing the Transform Matrix in the Transforms module, values automatically rounded to 2 decimal places (sankhesh) - assigned. - 0001885: [Core: GUI] Cannot adjust spacing of volume of .png images (finetjul) - assigned. - 0003020: [Core: Base Code] Modifying the transform matrix of a linear transform does not change file status to "Modified" (jcfr) - assigned. - 0002973: [Core: GUI] cannot type small numbers into the Volume spacing field (finetjul) - assigned. - 0003018: [Core: Base Code] "Hardening" multiplies matrices in wrong order (alexy) - assigned. - 0003014: [Core: Base Code] mrb does not survive roundtrip (pieper) - assigned. - 0002995: [Core: Scripting (Wrapping, Python)] Page up/page down/Home/End don't work in Python interactor (jcfr) - assigned. - 0002186: [Core: GUI] Add Scale slider for quickly scaling a linear transform matrix (crmullin) - assigned. - 0002906: [Core: GUI] Extra model hierarchy nodes showing up in Models module (Lchauvin) - assigned. - 0003007: [Core: GUI] Models are not listed in the models module (nicole) - resolved. - 0003003: [Core: Usability] Screenshots (nicole) - assigned. - 0002267: [Core: MRML] Add "SliceIntersectionWidth" property to ModelDisplayNode (fedorov) - assigned. - 0002019: [Core: Base Code] slicer won't start on mac os 10.5.8 (latest leopard) (jcfr) - assigned. - 0002998: [Core: Building (CMake, Superbuild)] Integrate OpenSSL (jcfr) - assigned. - 0002355: [Core: Base Code] Build and package openssl ? (jcfr) - assigned. - 0001693: [Core: Scripting (Wrapping, Python)] Implement a test named "py_SimpleITK_SlicerPushPullTest" (jcfr) - assigned. - 0001692: [Core: Scripting (Wrapping, Python)] Implement a test named "py_SimpleITK_ImportTest" (jcfr) - assigned. - 0002997: [Core: Base Code] Slicer 32 bits crash when cropping volume or trying to open editor (jcfr) - assigned. - 0002990: [Core: GUI] Allow modules to define custom layouts - assigned. - 0002989: [Core: Base Code] Loading the same color table node twice crashes Slicer. (jcfr) - assigned. - 0002974: [Core: GUI] Opacity set to a ModelHierarchy multiplies the children's opacities (alexy) - assigned. - 0002982: [Module BRAINS] Resize Image module shifts the image (hjmjohnson) - assigned. - 0002981: [Core: Extensions] Fix ModuleWizard to account for re-organized structure (pieper) - assigned. - 0002256: [Core: Base Code] Allow module paths to be disabled instead of deleted (jcfr) - assigned. - 0002977: [Core: Scripting (Wrapping, Python)] Python wrapping of VTK classes that are alongside a logic class fail (jcfr) - assigned. - 0002971: [Core: Documentation & Wiki] Install MetaTags extension (mhalle) - assigned. - 0002905: [Core: Documentation & Wiki] Create redirect from Latest to current stable version on the wiki (jcfr) - assigned. - 0002968: [Core: Documentation & Wiki] Slicer wiki - Enable short url => easier configuration of robots.txt (mhalle) - assigned. - 0002966: [Core: Base Code] Overwriting an output volume triggers VTK error (jcfr) - assigned. - 0002943: [Core: Command Line Modules (Modules/CLI)] ExpertAutomatedRegistration needs tests (mccormic) - assigned. - 0002289: [Module DICOM] CreateADICOMSeries using ITKv4 does not properly write out Z-spacing (millerjv) - assigned. - 0002708: [Core: Building (CMake, Superbuild)] Gatekeeper - Mac OSX 10.8 - Can't open because it s from an unidentified developer (jcfr) - assigned. - 0002696: [Core: Building (CMake, Superbuild)] Windows 8 support (jcfr) - assigned. - 0002702: [Core: Building (CMake, Superbuild)] Windows 8 - Not possible to differentiate between two different nightlies. (jcfr) - assigned. - 0002697: [Core: Building (CMake, Superbuild)] Associated publisher to windows NSIS installer - signing of package/application (jcfr) - assigned. - 0002958: [Module Editor] tweaks to the Editor UI (pieper) - assigned. - 0002642: [Core: Base Code] Speed up scene event invocations (finetjul) - assigned. - 0002955: [Core: Command Line Modules (Modules/CLI)] Add support for points as output types for CLIs (millerjv) - assigned. - 0002606: [Module Annotations] Design comments/issues on Annotation nodes (nicole) - assigned. - 0002941: [Core: Documentation & Wiki] Walk-thru documentation that clearly shows new developers step-by-step instructions to create and publish extensions (jcfr) - assigned. - 0002948: [Core: Usability] when saving an mrb, the file name is not preserved (pieper) - assigned. - 0002817: [Core: Extensions] svnuername and svnpassword removed when regenerating s4ext file (jcfr) - assigned. - 0002726: [Core: Documentation & Wiki] Create / Update extension template (jcfr) - assigned. - 0002776: [Core: Command Line Modules (Modules/CLI)] Add support for a CLI icon in addition to acknowledgement logos (millerjv) - assigned. - 0002808: [Core: QtTesting] py_NeurosurgicalPlanningTutorial failing on windows (sankhesh) - assigned. - 0002691: [Core: Base Code] No output messages in the slicer command (jcfr) - assigned. - 0002779: [Core: Extensions] Mechanism to keep track of the installed extensions across version (jcfr) - assigned. - 0002778: [Core: Extensions] Add "Download stats" on each extension page (jcfr) - assigned. - 0002784: [Core: GUI] No deactivation of the CLI module interface when running a process (jcfr) - assigned. - 0002711: [Module VolumeRendering] VTK OpenGL 3D Texture Mapper does not update automatically (finetjul) - assigned. - 0002395: [Core: Extensions] Report when extension description file specify read/write git repo - It causes checkout failures (jcfr) - assigned. - 0001259: [Core: Documentation & Wiki] Update Slicer Download page with new Dashboard link (jcfr) - assigned. - 0002686: [Module Annotations] Signal currentNodeChanged unnecessary re-declared in qMRMLAnnotationTreeView (nicole) - assigned. - 0002798: [Core: Documentation & Wiki] DTI tutorial starting from DICOM (spujol) - assigned. - 0002429: [Core: GUI] An invalid hierarchy node in the Models module after deleting a model node in the Data module (nicole) - assigned. - 0002741: [Module EMSegment] Fix EMSegCL_Task_{HumanEye, MRIHumanBrainExp}_BRAINS_small failing on windows (pohl) - assigned. - 0002780: [Module BRAINS] BRAINSFit takes a long time to run on windows (hjmjohnson) - assigned. - 0002574: [Module Annotations] Editing annotation names no longer alters their name (nicole) - assigned. - 0002593: [Core: Documentation & Wiki] Extend documentation of "Module Selection & Navigation" (wjp) - assigned. - 0002599: [Core: MRML] vtkObserverManager warning (alexy) - assigned. - 0002455: [Core: GUI] Process hangs on program close in certain cases when window level programmatically set (finetjul) - assigned. - 0002622: [Core: GUI] assert crash in scene model closing scene after change tracker (jcfr) - assigned. - 0002443: [Core: Base Code] add a run-time warning when trying to save a transformed .vtk file (finetjul) - assigned. - 0002730: [Core: GUI] Slicer hangs when saving scene in "3D only" layout. (millerjv) - assigned. - 0002644: [Core: Extensions] Extensions built from template should create Config.cmake file (jcfr) - assigned. - 0002793: [Core: GUI] duplicate non-functional slice controller popup (sankhesh) - assigned. - 0002816: [Module SceneViews] Restoring scene views from MRB (alexy) - assigned. - 0002775: [Core: QtTesting] py_NeurosurgicalPlanningTutorial failing on windows (sankhesh) - assigned. - 0002822: [Core: Building (CMake, Superbuild)] Sign windows package (jcfr) - assigned. - 0002823: [Module Annotations] Rulers not working in lightbox mode (nicole) - assigned. - 0002770: [Core: GUI] strange camera interaction (alexy) - assigned. - 0002466: [Core: Command Line Modules (Modules/CLI)] CLIs that use DVW nodes crash in MRMLIDImageIO (demian) - assigned. - 0002541: [Module Annotations] drag and drop multiple annotations into hierarchy doesn't work (nicole) - assigned. - 0002893: [Core: Documentation & Wiki] Add more details to SupportedData format page (sankhesh) - assigned. - 0001690: [Module Annotations] fiducial shows in wrong lightbox cell (nicole) - assigned. - 0002873: [Module Editor] Grow Cut Fails (millerjv) - assigned. - 0002829: [Core: Usability] If you have multiple versions of slicer on win 8, you can not distinguish them. (jcfr) - assigned. - 0002942: [Core: GUI] Python scripted modules not detected by the before/after module selection arrows (sankhesh) - assigned. - 0002939: [Core: QtTesting] Re-enable VolumeRendering tests (jcfr) - assigned. - 0002938: [Core: Scripting (Wrapping, Python)] Tweak python console (jcfr) - assigned. - 0002926: [Core: Base Code] Move vtkSlicerTransformLogic into Transforms module (jcfr) - assigned. - 0001299: [Core: GUI] Facelift for Sceneviews Module (nicole) - assigned. - 0002922: [Core: Extensions] LoadableExtensionTemplate doesn't have parameter node (jcfr) - assigned. - 0002762: [Core: GUI] add more examples to SampleData module (pieper) - assigned. - 0002917: [Core: Building (CMake, Superbuild)] Ensure --cmd option is available in installed package (sankhesh) - assigned. - 0002039: [Core: Command Line Modules (Modules/CLI)] Support self-describing CLI (jcfr) - assigned. - 0002910: [Core: Extensions] fiberviewer light does not work (fbudin) - assigned. - 0002912: [Core: Extensions] Install dependent extensions (jcfr) - assigned. - 0002904: [Core: Documentation & Wiki] Document process allowing to version wiki documentation (jcfr) - assigned. - 0002464: [Core: Documentation & Wiki] Document python "load" method properties (sankhesh) - assigned. - 0002891: [Core: Documentation & Wiki] Update documentation associated with itkMRMLIDImageIO.h (sankhesh) - assigned. - 0002895: [Core: GUI] Screenshot dialog can't take screenshot of charts (millerjv) - assigned. - 0002898: [Core: Base Code] Restore screenshot resolution for VTK render view (sankhesh) - assigned. - 0002896: [Core: Base Code] Report errors when reading file (sankhesh) - assigned. - 0001156: [Core: Packaging] Slicer launcher to embed Slicer icon (jcfr) - assigned. - 0002886: [Core: Documentation & Wiki] Upload Qt binary packages on Midas for future reference (jcfr) - assigned. - 0002363: [Core: Base Code] Add support for loading directory from command line (crmullin) - assigned. - 0001376: [Core: Packaging] logo is missing from windows installed launcher (crmullin) - assigned. - 0002866: [Core: Usability] Add a mechanism to easily upload MRB to Midas for bug reporting purpose (jcfr) - assigned. - 0002827: [Core: Extensions] Reporting module AdditionalLauncherSettings.ini not regenerated with change in version (jcfr) - assigned. - 0001838: [Module DICOM] Viewing DICOM header info. (assign to Steve Pieper) (pieper) - assigned. - 0002865: [Core: Extensions] Compilers are not being propagated to Extensions when building with Slicer_BUILD_TESTING_EXTENSIONS (jcfr) - assigned. - 0001472: [Core: GUI] Factorize ctkScreenshotDialog with qMRMLScreenshotDialog (sankhesh) - assigned. - 0001792: [Core: GUI] popup competes with modal dialog for priority (finetjul) - assigned. - 0002402: [Core: Command Line Modules (Modules/CLI)] Allow CLI modules to have string outputs (millerjv) - assigned. - 0002738: [Core: GUI] Visibility checkbox in Models module does not work in case of hierarchy nodes (sankhesh) - assigned. - 0001632: [Core: Usability] Slice intersections are not working consistently (inorton) - assigned. - 0002302: [Core: Base Code] add support for multiple desktops to slicer on mac (pieper) - assigned. - 0002825: [Core: Building (CMake, Superbuild)] Consolidate ExternalData.cmake and Midas.cmake (sankhesh) - assigned. - 0002479: [Core: Scripting (Wrapping, Python)] Get storable nodes w/o invoking "Save" dialog. (jcfr) - assigned. - 0002673: [Core: Command Line Modules (Modules/CLI)] Crop volume (millerjv) - assigned. - 0002597: [Core: Usability] make systematic fiducial editing possible (nicole) - assigned. - 0002563: [Core: GUI] Add the option to display color names instead of lookup table values for scalar bar (nicole) - assigned. - 0002560: [Core: Base Code] Models module does not have help popups on the gui elements (nicole) - assigned. - 0002740: [Core: Usability] Add setting for default annotation glyph (nicole) - assigned. - 0002739: [Core: GUI] Add configuration of two slice viewers (millerjv) - assigned. - 0002481: [Module ModelMaker] Model To Label Map module (millerjv) - assigned. - 0002640: [Core: Base Code] Feature request: Memory compression (pieper) - assigned. - 0002713: [Core: Base Code] vtkMRMLNode::SetScene() should be protected and set by scene (jcfr) - assigned. - 0002678: [Core: Base Code] rotate slice to background is not managed by SliceLinkLogic (millerjv) - assigned. - 0002679: [Core: Base Code] Slice view compositing is not managed by SliceLinkLogic (millerjv) - assigned. - 0002680: [Core: Base Code] Slice spacing is not managed by SliceLinkLogic (millerjv) - assigned. - 0002676: [Core: Base Code] Slice View show reformat widget is not managed by SliceLinkLogic (millerjv) - assigned. - 0002677: [Core: Base Code] lock reformat widget not managed by SliceLinkeLogic (millerjv) - assigned. - 0002682: [Core: Base Code] Background interpolation is not managed by SliceLinkLogic (millerjv) - assigned. - 0002685: [Core: Base Code] Lightbox not managed by SliceLinkLogic (millerjv) - assigned. - 0002681: [Core: Base Code] Slice spacing mode is not managed by SliceLinkLogic (millerjv) - assigned. - 0002684: [Core: Base Code] slice fov is not managed by SliceLinkLogic (millerjv) - assigned. - 0002683: [Core: Base Code] foreground interpolation is not managed by SliceLinkLogic (millerjv) - assigned. - 0002608: [Core: Base Code] Extend vtkMRMLNode::Copy behavior (alexy) - assigned. - 0002766: [Core: MRML] Refactor SliceModelDisplayableManager (alexy) - assigned. - 0002772: [Module DICOM] Mac OS X slicer built version - storescp to be copied to slicer-build (pieper) - assigned. - 0002771: [Module DICOM] Kill previous storescp processes when starting slicer (pieper) - assigned. - 0002765: [Core: Base Code] Running test AtlasTest lead to some Error related to MRB (pieper) - assigned. - 0002749: [Module Editor] Undo does not work as expected for change label effect (pieper) - assigned. - 0002815: [Core: GUI] old view image frame shows while hovering over popup menu (finetjul) - assigned. - 0002820: [Core: Extensions] qSlicerExtensionsModelManager::setExtensionsSettingsFilePath should be changed to accept QSettings object (jcfr) - assigned. - 0001406: [Core: Base Code] failure to load fiducials (nicole) - assigned. - 0002818: [Module DICOM] make the 'copy on import' checkbox more obvious on dicom import dialog (pieper) - assigned. - 0002204: [Module DICOM] Odd allocator bug in DCMTK code: SEGV on exit (pieper) - assigned. - 0002810: [Core: Performance] Performance problems with model display (alexy) - assigned. - 0002809: [Core: Building (CMake, Superbuild)] Create extensions for BlobDetection and ConnectedComponent module (liuy5) - assigned. - 0002769: [Core: MRML] Refactor ModelDisplayableManager (alexy) - assigned. - 0002799: [Core: Extensions] Documentation page URL? (jcfr) - assigned. - 0002513: [Core: Tutorial Testing] Tutorial 11 - Brain Atlas (finetjul) - assigned. - 0001672: [Core: Base Code] Change ctkDirectoryButton into ctkPathLineEdit (sankhesh) - assigned. - 0002721: [Core: Extensions] tweaks to the extension manager (jcfr) - assigned. - 0002331: [Core: Extensions] extension manager needs tweaking (jcfr) - assigned. - 0002334: [Core: Extensions] Differentiate different type of extenions in extension manager: Concept of channel (jcfr) - assigned. - 0002333: [Core: Extensions] Ensure scroll bar is displayed in Extensions Manager dialog (jcfr) - closed. - 0001585: [Core: GUI] Checkboxes in qMRMLCheckableNodeComboBox are invisible (sankhesh) - assigned. - 0002558: [Core: Tutorial slides (pdf / powerpoint)] Tutorial 1 - Load Scene has been removed. Add Data is now used. (spujol) - assigned. - 0002549: [Core: Tutorial slides (pdf / powerpoint)] Tutorial 0 - Training materials out of date with Add Data (Load Scene removed) (spujol) - assigned. - 0002548: [Core: Tutorial slides (pdf / powerpoint)] Tutorial 0 - Training materials out of date with Slice Controller two level controls (spujol) - assigned. - 0002559: [Core: Tutorial slides (pdf / powerpoint)] Tutorial 1 - Save Scene and Unsaved Data dialog image needs to be updated in the training material (spujol) - assigned. - 0002550: [Core: Tutorial slides (pdf / powerpoint)] Tutorial 0 - Training materials out of date with data paths (spujol) - assigned. - 0002547: [Core: Tutorial slides (pdf / powerpoint)] Tutorial 0 - Training materials out of date with DICOM Module & DICOM Browser (spujol) - assigned. - 0002754: [Module VolumeRendering] scene crash when selecting render method (finetjul) - assigned. - 0002745: [Core: Packaging] Minor bugs/features in midas advanced view (jcfr) - assigned. - 0002751: [Core: Building (CMake, Superbuild)] Tweak messages displayed when building with Slicer_USE_GIT_PROTOCOL set to OFF (jcfr) - assigned. - 0002486: [Core: MRML] Remove duplicate saving of node contents to scene and separate file (millerjv) - assigned. - 0002704: [Core: Building (CMake, Superbuild)] Improve script allowing to "version" na-mic data tree (sankhesh) - assigned. - 0002031: [Core: GUI] Load data functionality (sankhesh) - assigned. - 0001695: [Core: Chart] Chart - cleanup chart code (millerjv) - assigned. - 0002737: [Module Editor] improve island removal tool (pieper) - assigned. - 0002718: [Core: Base Code] Memory leaks when returning vtkCollection objects to Python as return value (pieper) - assigned. - 0002722: [Core: Extensions] Think about organization of Data/Modules directory on midas to accomodate extension relationship (jcfr) - assigned. - 0002717: [Module Annotations] Add shortcuts for annotations (nicole) - assigned. - 0002714: [Core: GUI] Color module - create copy of color node, not showing up in save data dialog (finetjul) - assigned. - 0001729: [Core: GUI] qMRMLCheckableNodeComboBox crash when changing node name (finetjul) - assigned. - 0002712: [Core: Command Line Modules (Modules/CLI)] Parsing an output parameter file with empty values causes a string error crash (millerjv) - assigned. - 0002612: [Core: Base Code] Inconsistent interpretation of orientation when loading NIfTI files. (pieper) - assigned. - 0002292: [Core: GUI] incorrect Data tree and ultimate crash (finetjul) - assigned. - 0002709: [Core: Building (CMake, Superbuild)] MacOSX 10.8 - X11 is needed to run Slicer (jcfr) - assigned. - 0002153: [Core: Chart] Crash when deleting an ArrayNode from the Data module (alexy) - assigned. - 0002706: [Core: Building (CMake, Superbuild)] build version listed on slicer download page differs from the downloaded folder (jcfr) - assigned. - 0001578: [Core: Base Code] Make sure --stero command line option works (jcfr) - assigned. - 0001153: [Core: GUI] Report scene loading errors (jcfr) - assigned. - 0002699: [Core: MRML] Add test for vtkMRMLCommandLineModuleNode (alexy) - assigned. - 0001914: [Module Annotations] fiducial points misplaced after switching layouts (nicole) - assigned. - 0001959: [Core: Base Code] Slicer view messed up after sequential layout switching (millerjv) - assigned. - 0001683: [Core: Packaging] ctk app launcher doesn't handle windows command console (jcfr) - assigned. - 0002671: [Core: GUI] Persistent texture mapping for models (alexy) - assigned. - 0001983: [Core: QtTesting] More descriptive name for Qt Testing (jcfr) - assigned. - 0002669: [Core: Extensions] Registration of scripted displayable managers (jcfr) - assigned. - 0001603: [Core: Packaging] The windows installer does not show the slicer logo (crmullin) - assigned. - 0001386: [Core: GUI] Transforms GUI - slider values go haywire (alexy) - assigned. - 0001285: [Core: GUI] Expand the Transfer function editor vertically (finetjul) - assigned. - 0001395: [Module Diffusion] slice glyphs do not scale right (alexy) - assigned. - 0001408: [Core: GUI] remove stylesheet use in tractography display widget (inorton) - assigned. - 0001409: [Core: GUI] Add shortcut to maximize the current/focus/active view (finetjul) - assigned. - 0001262: [Module VolumeRendering] annotations are not properly composited with volume rendering (willschroeder) - assigned. - 0001412: [Core: GUI] need dicom offset in DataProbe (pieper) - assigned. - 0001295: [Core: GUI] Volumes module cosmetics (finetjul) - assigned. - 0001609: [Module VolumeRendering] Add "Default" suffix to default memory Size (finetjul) - assigned. - 0001349: [Core: GUI] Error icon is missing from main window (crmullin) - assigned. - 0001359: [Core: GUI] layout modification for better editing (millerjv) - assigned. - 0001334: [Core: Usability] Add color of ROI handle to Slicer palette (wjp) - assigned. - 0001323: [Core: GUI] icon for attaching the module panel (finetjul) - assigned. - 0001309: [Core: Usability] Center 3D viewer holding down the shift key (pieper) - assigned. - 0001686: [Core: GUI] changing layouts changes the FOV in viewers (millerjv) - assigned. - 0001293: [Core: GUI] Welcome module needs update (wjp) - assigned. - 0001755: [Module VolumeRendering] Synchronize volume fails with A1_grayT1 (finetjul) - assigned. - 0001287: [Core: GUI] Collapse in ctkTreeView automatically closes the popup (finetjul) - assigned. - 0001374: [Core: GUI] create new volume behavior (finetjul) - assigned. - 0001248: [Core: GUI] Scrollarea that ensure expanded collapsible button/groupbox is visible (finetjul) - assigned. - 0001427: [Core: Usability] Module panel issues (finetjul) - assigned. - 0001479: [Core: Usability] Slicer command line argument to preload files and scenes (finetjul) - assigned. - 0001471: [Core: Command Line Modules (Modules/CLI)] Result of N4 filter does not display (finetjul) - assigned. - 0001470: [Module VolumeRendering] transfer function looks weird (finetjul) - assigned. - 0001550: [Module VolumeRendering] Warn the user that the "synchronize with volume" can loose all the custom transfer functions (finetjul) - assigned. - 0001099: [Module VolumeRendering] volume render cutout (finetjul) - assigned. - 0001442: [Core: Usability] Adding labelmap resets all the sliceviews (finetjul) - assigned. - 0001530: [Core: GUI] search for model names (finetjul) - assigned. - 0001576: [Module VolumeRendering] VR artifacts with Manix dataset (finetjul) - assigned. - 0001583: [Core: GUI] lightbox does not work properly (millerjv) - assigned. - 0001540: [Module VolumeRendering] Label map rendering with texture mapping rendering (finetjul) - assigned. - 0001462: [Core: GUI] Mouse scroll wheel and file type selector focus (finetjul) - assigned. - 0001453: [Core: GUI] slice controller module shows incomplete listing of visible slice viewers (millerjv) - assigned. - 0001398: [Core: GUI] Edit Properties... doesn't exist everywhere (finetjul) - assigned. - 0001473: [Core: GUI] Colors module GUI - need color indices (finetjul) - assigned. - 0001094: [Core: Usability] Editor: switch lag. (finetjul) - assigned. - 0001477: [Module VolumeRendering] "Painting" a volume rendering (pieper) - assigned. - 0001258: [Core: GUI] Part of the menu when selecting things (crmullin) - assigned. - 0001360: [Core: GUI] Module pull-down doesn't display list within screen area (finetjul) - assigned. - 0001422: [Core: GUI] color selector shows diffusion tensor proprty nodes with bad icons (crmullin) - assigned. - 0002461: [Module VolumeRendering] ROI could define region to hide instead of region to show (finetjul) - assigned. - 0001418: [Core: GUI] add progress bar to sceneview restore. (nicole) - assigned. - 0001424: [Core: GUI] it would be nice to have a description field for volumes and models (finetjul) - assigned. - 0001468: [Module VolumeRendering] New and unwanted clipping behavior (finetjul) - assigned. - 0002637: [Core: Scripting (Wrapping, Python)] Include all Python header files with nightly binary build (jcfr) - assigned. - 0002176: [Core: Base Code] Slice opacity in 3D viewer (nicole) - assigned. - 0002661: [Module Annotations] Update loadFiducialList from util.py to support acsv file (nicole) - assigned. - 0002654: [Core: Extensions] Support extension metadata url having parameter (jcfr) - assigned. - 0002648: [Core: Building (CMake, Superbuild)] Rename macro "slicerMacroBuildQtModule" into "slicerMacroBuildLoadableModule" (jcfr) - assigned. - 0002646: [Core: Extensions] Should be possible to specify svnusername and svnpassword in the extension CMakeLists.txt directly (jcfr) - assigned. - 0002623: [Module VolumeRendering] Change vtkMRMLVolumeRenderingDisplayableManager::DisplayNodes from map to vector (finetjul) - assigned. - 0002628: [Module VolumeRendering] VR displayable manager should not show display node that are not referenced by displayable node (finetjul) - assigned. - 0002619: [Core: GUI] improved workflow for download from cdash (jcfr) - assigned. - 0002297: [Core: GUI] initialization of 3d viewer (finetjul) - assigned. - 0002614: [Core: Base Code] Label statistics should report center of mass (pieper) - assigned. - 0002539: [Core: Base Code] Update node reference before AddNode to scene (finetjul) - assigned. - 0001943: [Module SceneViews] restoring Slicer3 scene views crashes the slicer (nicole) - assigned. - 0002596: [Core: QtTesting] Investigate how QtTesting could be recorded as python file (sankhesh) - assigned. - 0002571: [Core: Building (CMake, Superbuild)] In MRML project there are MRML_USE_Teem and MRML_USE_vtkTeem CMake variable (jcfr) - assigned. - 0002537: [Core: Scripting (Wrapping, Python)] expose output and error logs to the slicer.app.errorlogmodel object (jcfr) - assigned. - 0002565: [Core: Base Code] Add a function name ctk::composePath (sankhesh) - assigned. - 0002477: [Core: GUI] Background and Foreground Images Crop Each Other in Slice Views (pieper) - assigned. - 0002524: [Module VolumeRendering] Customize volume rendering - way to unselect one or more of the labels (finetjul) - assigned. - 0002536: [Core: Documentation & Wiki] Have CLI parameters described on module documentation (jcfr) - assigned. - 0002529: [Module VolumeRendering] transfer function is unstable in multivolume explorer (finetjul) - assigned. - 0002427: [Core: GUI] No implementation of qMRMLNodeComboBox::editCurrentNode() (finetjul) - assigned. - 0002109: [Core: GUI] Edit properties in Data module does not switch to the correct object (finetjul) - assigned. - 0001832: [Core: Base Code] add try/catch around render calls and event processing (sankhesh) - assigned. - 0002291: [Core: Base Code] "Add a directory" cannot navigate path (sankhesh) - assigned. - 0001365: [Core: Scripting (Wrapping, Python)] QTScriptedModules - Add support for __init__.py (jcfr) - assigned. - 0002474: [Core: GUI] Popup window disappears if a slice view control is pinned (finetjul) - assigned. - 0001981: [Core: GUI] Volume in slice viewer appears black if foreground volume is out of the slice plane or rotated (alexy) - assigned. - 0002487: [Core: MRML] provide a utility method in vtkMRMLHierarchyNode to move hierarchies up/down one in parent (alexy) - assigned. - 0002475: [Core: Command Line Modules (Modules/CLI)] Running CLIs from command line on Windows console produces no console output (jcfr) - assigned. - 0001932: [Module Annotations] Removing an annotation resets view sizes. (nicole) - assigned. - 0002449: [Core: Usability] infinite hang if you try to add data and there is an unresponsive network directory (jcfr) - assigned. - 0002056: [Core: Building (CMake, Superbuild)] On Windows - Support packaging of Slicer in Debug (crmullin) - assigned. - 0002425: [Core: Base Code] Scalar bar colors do not correspond to real values (pieper) - assigned. - 0001714: [Module Annotations] Serious annotation fiducial performance problems. (nicole) - assigned. - 0001669: [Core: Usability] Add recent loaded files menu entry in File menu bar (crmullin) - assigned. - 0001718: [Core: Scripting (Wrapping, Python)] SSL / HTTPS Issues with Python Interactor and QT - Windows 7 (jcfr) - assigned. - 0001797: [Core: Base Code] big fiducials (nicole) - assigned. - 0002412: [Module Annotations] Load data - annotation files not loading consistently (nicole) - assigned. - 0002111: [Module Annotations] Make fiducial lists transformable (nicole) - assigned. - 0002419: [Core: Usability] Support for cursor modes (millerjv) - assigned. - 0001839: [Core: GUI] cosmetics for the welcome module (wjp) - assigned. - 0001845: [Core: GUI] GUI issue in red slicer viewer mode on Mac (finetjul) - assigned. - 0001991: [Core: GUI] Cosmetics for the slicer download page (mhalle) - assigned. - 0001976: [Module DICOM] DICOM retrieve should start listner (pieper) - assigned. - 0001917: [Core: Base Code] Add a new "create and Name" option to the qMRMLNodeComboBox (finetjul) - assigned. - 0001913: [Core: GUI] Apply BSpline transformation to models (finetjul) - assigned. - 0001912: [Core: Base Code] Memory management (finetjul) - assigned. - 0001823: [Core: GUI] Save Scene window disappears after dragging it or using 'Destination for all selected' (Windows) (finetjul) - assigned. - 0001909: [Core: GUI] 2D view should show the outer bound of background and foreground (alexy) - assigned. - 0001827: [Core: GUI] label statistics module allows to save the CSV inside the module (pieper) - assigned. - 0001892: [Core: Base Code] Colors Module GUI: LUT label values issue (finetjul) - assigned. - 0001872: [Core: Base Code] Provide convenient function in C++ and/or python allowing to set current label/bg/fg (finetjul) - assigned. - 0001875: [Core: GUI] strange behavior of the volume module (finetjul) - assigned. - 0001886: [Module VolumeRendering] GPU Volume Mapper does not update when the underlying volume is marked modified (finetjul) - assigned. - 0001881: [Core: Usability] OR-compatible remote control interface (pieper) - assigned. - 0001994: [Core: Usability] Manual Threshold omits maximal values. (finetjul) - assigned. - 0001768: [Core: Usability] Toolbar popup cropped (finetjul) - assigned. - 0002003: [Core: MRML] Using "JumpAllSlices" doesn't update the slicer associated with used Slice node (pieper) - assigned. - 0002077: [Core: GUI] Popup widget does not respect OS stacking? (finetjul) - assigned. - 0001996: [Module VolumeRendering] the vtk gpu raycaster does not render in full quality (finetjul) - assigned. - 0002014: [Module DICOM] allow selection of subset of directories for dicom import (pieper) - assigned. - 0002009: [Core: GUI] QtDesigner crashes when adding SpinBox or DoubleSpinBox (finetjul) - assigned. - 0002388: [Core: Command Line Modules (Modules/CLI)] Standalone does not load over CLI because of time out (millerjv) - assigned. - 0002307: [Module Editor] cosmetics for the order feature in the per structures part of the editor (pieper) - assigned. - 0002399: [Core: Command Line Modules (Modules/CLI)] Automatically generate meaningful names for new nodes (millerjv) - assigned. - 0002400: [Core: MRML] Rename the "Create and rename new Node" command to "Create new Node as..." (alexy) - assigned. - 0002309: [Core: GUI] Viewport Widgets are too much on top (finetjul) - assigned. - 0002382: [Core: Base Code] slicer.ini layout setting causes crash (finetjul) - assigned. - 0002322: [Module Editor] Add label interpolation and/or port ModelDraw to slicer4 (pieper) - assigned. - 0001954: [Core: GUI] drag & drop: option to lock view settings (finetjul) - assigned. - 0002403: [Core: GUI] GUI callback functions for ModelHierarchy MRML node not functioning (finetjul) - assigned. - 0002362: [Module Editor] ROI limitation for Effects (pieper) - assigned. - 0002154: [Core: Chart] Charts do not update when an ArrayNode is removed from the scene. (millerjv) - assigned. - 0002346: [Module Diffusion] default color of tracts (demian) - assigned. - 0002029: [Core: GUI] toolbar for the extension manager (crmullin) - assigned. - 0002300: [Core: GUI] To invert the spin direction of yaw, roll and pitch buttons. Cross-eyed stereo viewing (pieper) - assigned. - 0002206: [Module DICOM] Streamline the way the DICOM dialog is opened (pieper) - assigned. - 0002209: [Core: Chart] Chart - Update axis range (millerjv) - assigned. - 0002207: [Module DICOM] DICOM module should register a Setting panel for its settings (pieper) - assigned. - 0001847: [Core: Chart] Charts and chart views do not handle scene changes automatically (millerjv) - assigned. - 0002393: [Core: Command Line Modules (Modules/CLI)] Consolidate the image resample modules (millerjv) - assigned. - 0002244: [Core: Chart] categorical axis for line or scatter plots without using Label Maps (millerjv) - assigned. - 0002254: [Module DICOM] Unable to create Slicer DICOM data bundle (pieper) - assigned. - 0002226: [Core: Chart] Documentation for enabling new chart types (millerjv) - assigned. - 0002223: [Core: Command Line Modules (Modules/CLI)] Feature request: option to pass to CLI the full path name of a DICOM file from the DICOM series containing a volume. (millerjv) - assigned. - 0002296: [Module Diffusion] streamlines look different when loading a scene and after moving the camera (demian) - assigned. - 0002211: [Core: Chart] Chart - Export mechanism for chart (millerjv) - assigned. - 0002212: [Module MultiVolumeExporer] MultiVolume - Clicking on the interactive chart should probably update the current slice/frame (fedorov) - assigned. - 0002213: [Module MultiVolumeExporer] Progress should probably be reported when loading multivolume (fedorov) - assigned. - 0001605: [Core: Usability] Crosshairs do not work in Shift + mouse move (millerjv) - assigned. - 0001613: [Core: GUI] when clicking on the icon shortcut for the volume module, there is a latency before the module comes up (finetjul) - assigned. - 0001752: [Module VolumeRendering] volume rendering is adaptive, even if the quality control is set to maximum (finetjul) - assigned. - 0001748: [Core: MRML] Slicer failed to set crosshair correctly (millerjv) - assigned. - 0001596: [Module VolumeRendering] "Inverse" ROI rendering (finetjul) - assigned. - 0001730: [Core: MRML] vtkMRMLColorLogic::GetProceduralColorNodeID leaks the string returned for the ID (finetjul) - assigned. - 0001746: [Core: GUI] double pop-up needs tweak in behavior (finetjul) - assigned. - 0001332: [Core: GUI] file browser for "open scene" (finetjul) - assigned. - 0001419: [Core: GUI] show name of last scene restored in data probe (pieper) - assigned. - 0001461: [Core: GUI] crosshairs do not display properly in compare viewer (millerjv) - assigned. - 0001756: [Module DICOM] Slicer shutdown - DICOM module output an error messahe (pieper) - assigned. - 0001535: [Core: Usability] Cannot render slice in 3d window from compareview in slice linked mode (millerjv) - assigned. - 0001742: [Core: GUI] autosizing behavior in slicer 4 is not good at all (millerjv) - assigned. - 0001546: [Core: GUI] adjusting images ater loading and reconfiguring leads to unexpected results (millerjv) - assigned. - 0001294: [Core: Building (CMake, Superbuild)] try to remove architecture dependent build code (domibel) - assigned. - 0001586: [Module VolumeRendering] vtk 3D texture mapping VR is clipped (finetjul) - assigned. - 0001601: [Core: Usability] Tree widget "resize" feature (finetjul) - assigned. - 0001770: [Core: GUI] Close scene breaks the View Controllers module (millerjv) - assigned. - 0001636: [Core: Usability] "Harden transform" on ROI is incorrect when tfm has rotation (alexy) - assigned. - 0001736: [Core: Command Line Modules (Modules/CLI)] Simple region growing : asymetric multiplier (millerjv) - assigned. - 0001640: [Core: GUI] Data Module: no autoscroll when dragging MRML node (finetjul) - assigned. - 0001230: [Core: GUI] Reduce mouse clicks in Sample Data module (dpace) - assigned. - 0001642: [Core: Base Code] lut is not found even though it is present (finetjul) - assigned. - 0001245: [Core: GUI] Custom tooltip in the Window/Level widget don't draw shadow on Windows (finetjul) - assigned. - 0001231: [Core: GUI] Add progress bar to Sample Data widget (dpace) - assigned. - 0001671: [Core: Base Code] Extract logic of camera module into a module logic (finetjul) - assigned. - 0001659: [Module VolumeRendering] VTK OpenGL clips view (finetjul) - assigned. - 0001644: [Core: Base Code] Active slice feature of lightbox is broken (finetjul) - assigned. - 0001728: [Core: MRML] Support color table files in MRML (finetjul) - assigned. - 0001088: [Core: Usability] Emphasize files missing options in Add Data Dialog (finetjul) - assigned. - 0001820: [Core: GUI] UI bug (?) scroll-wheel changes random values because field focus is grabbed automatically when mouse over (finetjul) - assigned. - 0001771: [Core: GUI] Show only in 3D slices from compare views in layout (millerjv) - assigned. - 0001614: [Core: Base Code] Naming convention - Scripted vs ScriptedLoadable (finetjul) - assigned. - 0001794: [Core: Base Code] Command-line options override application settings, even when not set (finetjul) - assigned. - 0001615: [Core: Base Code] Naming convention - Widget, Widgets, Logic, Logics, DisplayableManagers ... (finetjul) - assigned. - 0001617: [Core: Base Code] CLI - ProbeVolumeWithModel module has no test (lauren) - assigned. - 0001618: [Core: Base Code] CLI - ExtractSkeleton module has no test (millerjv) - assigned. - 0001805: [Module VolumeRendering] Cannot switch between volumes (finetjul) - assigned. - 0001626: [Module VolumeRendering] camera and zoom pan are not set properly on restoring a sceneview. (millerjv) - assigned. - 0001819: [Core: GUI] help pop up called keyboard shortcuts needs updating (finetjul) - assigned. - 0002424: [Core: Chart] Add support for high-low-close chart type (millerjv) - assigned. - 0001241: [Core: GUI] Weird popup behavior with mac (finetjul) - assigned. - 0001141: [Core: GUI] Add utility function for ctkCheckableHeaderView (finetjul) - assigned. - 0002411: [Core: Command Line Modules (Modules/CLI)] Measurement tag (DoubleArrayNode) is not supported in the GUI for a CLI (millerjv) - assigned. - 0002178: [Module Editor] Can't edit labelmap (pieper) - assigned. - 0002397: [Core: Packaging] Remove lib and h files from the Slicer package (jcfr) - assigned. - 0002396: [Core: Packaging] Slicer 64-bit package on Windows is installed into wrong directory by default (jcfr) - assigned. - 0002423: [Core: Extensions] Superbuild extension template should not require CTestConfig in the source tree (jcfr) - assigned. - 0001908: [Core: Extensions] List as value for MODULE_CATEGORY and MODULE_CONTRIBUTORS (jcfr) - assigned. - 0001890: [Core: Scripting (Wrapping, Python)] Python doesn't support new-style classes (jcfr) - assigned. - 0001871: [Core: Scripting (Wrapping, Python)] Add convenient method allowing to read a file into a string (jcfr) - assigned. - 0001486: [Core: Packaging] VTK Qt designer plugins are missing (jcfr) - assigned. - 0001928: [Core: Building (CMake, Superbuild)] Slicer 4.1.0 compiled with glibc 2.7, incompaitble with CentOS 5.5 (glibc 2.5) (jcfr) - assigned. - 0001947: [Core: Extensions] resize extension screenshots to match dialog size (jcfr) - assigned. - 0001831: [Core: Usability] Easy mechanism to comment/rate any given module. (jcfr) - assigned. - 0001830: [Core: Usability] When module failed to load, should be easy to get the associated error. (jcfr) - assigned. - 0002022: [Core: Building (CMake, Superbuild)] Build errors when using wrong CMake or QT version (jcfr) - assigned. - 0002025: [Core: Building (CMake, Superbuild)] Build errors when using wrong CMake (jcfr) - assigned. - 0001925: [Core: Building (CMake, Superbuild)] Display a clear message when Slicer is built on an un-supported platform (jcfr) - assigned. - 0001269: [Core: Base Code] 1 function call for 1 argument to parse argc/argv with ctkCommandLineParser (jcfr) - assigned. - 0001739: [Core: Building (CMake, Superbuild)] SLICER_USE_SYSTEM_xyzlib for each superbuild dependency (jcfr) - assigned. - 0001543: [Core: Documentation & Wiki] Install CategoryTree extension (mhalle) - assigned. - 0001602: [Core: Documentation & Wiki] "tag" to identify CLI executables (jcfr) - assigned. - 0001968: [Core: Documentation & Wiki] Setup robot.txt so that only current stable version of Slicer documentation is indexed (jcfr) - assigned. - 0002401: [Core: QtTesting] CTest generic module tests fail in debug mode (jcfr) - assigned. - 0002398: [Core: Packaging] Remove the EMSegment module from the Slicer install package and distribute it as an extension (jcfr) - assigned. - 0002417: [Core: Command Line Modules (Modules/CLI)] Resample Image (BRAINS) module does not export/import Parameter set node correctly (millerjv) - assigned. - 0001702: [Core: Chart] Chart - Add Save capability (millerjv) - assigned. - 0001701: [Core: Chart] Chart - Create module to control all aspects of charts. (millerjv) - assigned. - 0001705: [Core: Chart] Chart - Modifying a data array does not cause the Chart to update. (millerjv) - assigned. - 0001696: [Core: Chart] Chart - Prevent Chart regeneration on every Modifed() (millerjv) - assigned. - 0001697: [Core: Chart] Chart - HighLight when clicking on plot (millerjv) - assigned. - 0001700: [Core: Chart] Chart - When doing categorical axes, the highlighter/cursor shows the index not the value (millerjv) - assigned. - 0001704: [Core: Chart] Chart - Add snapshotting capability (millerjv) - assigned. - 0001703: [Core: Chart] Chart - Add printing or PDF export capability (millerjv) - assigned. - 0002274: [Core: Extensions] Low resolution icon for extensions (jcfr) - assigned. - 0002384: [Core: GUI] arbitrary screen layout grids (millerjv) - assigned. - 0002404: [Core: MRML] Support loading scenes with '&' in model filenames (finetjul) - assigned. - 0002413: [Core: Usability] Add capability to edit multivolume (fedorov) - assigned. - 0001263: [Core: Base Code] Simplify qMRMLUtils::qImageToVtkImageData() (crmullin) - assigned. - 0001985: [Core: GUI] Redesign color dialog to add shading (crmullin) - assigned. - 0001152: [Core: Base Code] move cli logic into mrml (crmullin) - assigned. - 0002160: [Core: QtTesting] Record usage statistics (crmullin) - assigned. - 0002416: [Core: MRML] Temporary path should be accessible from MRML (jcfr) - assigned. - 0001937: [Module Annotations] Remove Qt dependency from vtkMRMLAnnotationsLogic (nicole) - assigned. - 0002370: [Core: Documentation & Wiki] Document Slicer factory organization (crmullin) - assigned. - 0002365: [Core: Extensions] ExtensionsIndex workflow improvments (jcfr) - assigned. - 0002272: [Core: Documentation & Wiki] Simplfy the first screen of the Slicer documentation page (mhalle) - assigned. - 0002072: [Core: Command Line Modules (Modules/CLI)] Document / improve mechanism allowing to specify logo(s) associated with CLIs (crmullin) - assigned. - 0002192: [Core: GUI] No error message when 64-bit Slicer is started on a 32-bit Windows (jcfr) - assigned. - 0002203: [Core: Documentation & Wiki] Include a tutorial for Endoscopy module (pieper) - assigned. - 0002318: [Core: Documentation & Wiki] Update dashboard setup instruction when wiki Nightly documentation is available (jcfr) - assigned. - 0002313: [Core: Base Code] Implement onSDBSaveToDCMActionTriggered (pieper) - assigned. - 0002308: [Core: Base Code] "Add Data" lists both pieces of header/image file images (nicole) - assigned. - 0002190: [Core: Documentation & Wiki] Fix graphviz installation on Slicer wiki (mhalle) - assigned. - 0002157: [Core: Documentation & Wiki] Add testname / filename convention to Style_Guide wiki page (jcfr) - assigned. - 0002161: [Core: GUI] Adding CLI modules to favorite modules list does not work (crmullin) - assigned. - 0002164: [Core: GUI] General settings "Show text under icons in toolbar buttons" is not saved (crmullin) - assigned. - 0002328: [Core: Command Line Modules (Modules/CLI)] Extend command line executable auto GUI generation to support mutually exclusive sets of parameters (millerjv) - assigned. - 0002168: [Core: QtTesting] Test py_DiffusionTensorImagingTutorial failing on windows 32bit (crmullin) - assigned. - 0002273: [Core: Command Line Modules (Modules/CLI)] Demons Registration (BRAINS) does not produce deformation field / cannot save (hjmjohnson) - assigned. - 0002170: [Core: Documentation & Wiki] Install extension SyntaxHighlight_GeSHi on Slicer wiki (mhalle) - assigned. - 0002086: [Core: Extensions] Revision number in extension detail view page (jcfr) - assigned. - 0002171: [Core: Extensions] Integrate extension license information on the extension server (jcfr) - assigned. - 0002263: [Core: Base Code] Fail a reload a scene containing a color node with '&' char in color name (nicole) - assigned. - 0002250: [Core: Building (CMake, Superbuild)] Add windows security compiler flags (jcfr) - assigned. - 0002076: [Core: Building (CMake, Superbuild)] Add windows flag allowing to warn if there are unused variable. (crmullin) - assigned. - 0002146: [Core: Extensions] Provide a mechanism allowing to upgrade or downgrade an installed extension (jcfr) - assigned. - 0002145: [Core: Extensions] Provide a mechanism allowing to easily install extension given the location of the package (jcfr) - assigned. - 0002142: [Core: Documentation & Wiki] Update QtTesting wiki pages (crmullin) - assigned. - 0002210: [Core: Chart] Chart - Access to line width, chart type and other jqplot property (millerjv) - assigned. - 0002087: [Core: Extensions] Configure "vtkSlicerVersionConfigure.h.in" at build time to ensure it's always up-to-date (jcfr) - assigned. - 0002138: [Core: Documentation & Wiki] Document process to create a branch (jcfr) - assigned. - 0002103: [Core: Packaging] Midas / download.slicer.org - More robust mechanism to prevent malicious download (zach_mullen) - assigned. - 0002089: [Core: Extensions] Either on-demand or when slicer starts, check if there are available extensions update. (jcfr) - assigned. - 0002095: [Core: Extensions] Integrate VMTK extension (haehn) - assigned. - 0002264: [Core: QtTesting] Update Slicer QtTesting to display a message when a tutorial has been successfully replayed (crmullin) - assigned. - 0001982: [Core: Command Line Modules (Modules/CLI)] fiducial is not available for fiducial based tractography (nicole) - assigned. - 0001227: [Core: Usability] Python console automatically adds () after function names (crmullin) - assigned. - 0001565: [Core: Documentation & Wiki] Email address in the documentation template (jcfr) - assigned. - 0001897: [Module Annotations] Feature request -Fiducial transformation (nicole) - assigned. - 0001920: [Core: Command Line Modules (Modules/CLI)] Include completion time into the CLI module panel (crmullin) - assigned. - 0002052: [Core: Documentation & Wiki] Add a catalog of available test data (jcfr) - assigned. - 0001915: [Core: Base Code] Effect of matrix bottom row in Transforms module (finetjul) - assigned. - 0002033: [Core: Documentation & Wiki] Mechanism to list extensions on top of Documentation page (jcfr) - assigned. - 0001877: [Module Annotations] key binding to place fiducial (nicole) - assigned. - 0001734: [Core: GUI] Simplify the LUT pull-down (finetjul) - assigned. - 0002027: [Core: Extensions] Make sure extension build error are reported on CDash (jcfr) - assigned. - 0001809: [Module Annotations] Annotation size is not updated when choosing between small/Medium/LARGE (nicole) - assigned. - 0002047: [Core: Documentation & Wiki] Automatically populate author and acknowledgement from module XML (jcfr) - assigned. - 0002048: [Core: Documentation & Wiki] Wiki module category listing is not working perfectly (jcfr) - assigned. - 0002051: [Core: Documentation & Wiki] Compile a set of example illustrating the best "testing" practice (jcfr) - assigned. - 0002013: [Core: Documentation & Wiki] Create a Resources page on Slicer wiki (jcfr) - assigned. - 0001873: [Core: Base Code] Saving a scene with a new LUT (nicole) - assigned. - 0002071: [Core: Extensions] Submit build associated with extension build system driver only if error occured (jcfr) - assigned. - 0001743: [Core: Base Code] Redesign the link mechanism (finetjul) - assigned. - 0001604: [Module Annotations] fiducials visibility status not tracked in initial creation of a dual 3d view setup (nicole) - assigned. - 0001620: [Core: Base Code] CLI - ComputeSUVBodyWeight module has no test (nicole) - assigned. - 0001910: [Core: Command Line Modules (Modules/CLI)] Problem with fiducial registration (caseygoodlett) - assigned. - 0001662: [Core: Usability] Expand scene snapshot support for more layouts (nicole) - assigned. - 0001760: [Module SceneViews] Remember Thumbnail preference when taking SceneViews (nicole) - assigned. - 0001717: [Module Annotations] Fiducial list is now saved to (100s) of .acsv files (nicole) - assigned. - 0002230: [Module Annotations] Fiducial list name incorrect in CLI (nicole) - assigned. - 0001898: [Module Annotations] Feature request - Measuring with fiducials (nicole) - assigned. - 0001911: [Module Annotations] Dissappearing fiducials (nicole) - assigned. - 0001843: [Module Annotations] Fiducial glyphs and text is distorted in compare viewer (nicole) - assigned. - 0001834: [Core: Command Line Modules (Modules/CLI)] CLI parameter: point mulitpe="false" option not really supported in GUI (nicole) - assigned. - 0001716: [Module Annotations] Request: separate control buttons from scrollable frame (nicole) - assigned. - 0001267: [Module Annotations] The annotations module colors and fonts (nicole) - assigned. - 0001383: [Core: Base Code] fiducials slow down volume rendering (nicole) - assigned. - 0002252: [Core: Command Line Modules (Modules/CLI)] Optional/required argument (millerjv) - assigned. - 0002208: [Core: Chart] Chart - Move the legend around (millerjv) - assigned. - 0002196: [Core: Command Line Modules (Modules/CLI)] Command line module hangs – regression from slicer 3 to slicer 4 (jcfr) - assigned. - 0002104: [Core: GUI] Independent top level view windows so they can be on separate monitors (pieper) - assigned. - 0002078: [Core: Usability] Link the volume in the renderer to the slices (finetjul) - assigned. - 0001930: [Core: Usability] Scrolling volume slices past the last slice (pieper) - assigned. - 0001929: [Core: Usability] Texts in 3D are hard to see (nicole) - assigned. - 0001918: [Core: Usability] Color scale (nicole) - assigned. - 0001880: [Core: Usability] option to not reset views after loading data (pieper) - assigned. - 0001879: [Core: Usability] tool to easily move through loaded volumes (pieper) - assigned. - 0001857: [Core: Usability] Custom window/level presets (finetjul) - assigned. - 0001333: [Core: Usability] python - slicer.cli - improve "run" method parameter checking (jcfr) - assigned. - 0001858: [Core: Command Line Modules (Modules/CLI)] On the XML description of a CLI modile, the XML attribute type="any" on the tag image does not work (millerjv) - assigned. - 0001798: [Core: Base Code] Backface culling in Models Module (finetjul) - assigned. - 0001630: [Core: Usability] 3d view windows zoom out when panning using certain wireless mouse (pieper) - assigned. - 0001390: [Core: GUI] Antialiasing option (finetjul) - assigned. - 0001268: [Core: GUI] Fiducial placement: jump to local min/max (nicole) - assigned. - 0002364: [Core: Base Code] Refine how "fiber bundles" are loaded from command line (crmullin) - assigned. - 0002369: [Core: Building (CMake, Superbuild)] Move Slicer factory dashboard script into a dedicated repository (crmullin) - assigned. - 0002260: [Core: Base Code] Update Module template to include widget library (jcfr) - assigned. - 0002337: [Core: Base Code] Add test to vtkSlicerDataProbeLogic (jcfr) - assigned. - 0002345: [Core: Scripting (Wrapping, Python)] crash on startup based on module path (jcfr) - assigned. - 0002344: [Core: Packaging] option to do a *full* uninstall that removes settings files (jcfr) - assigned. - 0002304: [Core: Extensions] Get the path to CL compiler when using MSVC (jcfr) - assigned. - 0002285: [Core: Documentation & Wiki] Add "Data" section to module documentation page (crmullin) - assigned. - 0002172: [Core: Extensions] Provide mechanism allowing to compute code coverage associated with extension (jcfr) - assigned. - 0002189: [Core: Scripting (Wrapping, Python)] Embed IPython (jcfr) - assigned. - 0002182: [Core: Documentation & Wiki] Keep different version of Slicer doxygen documentation (jcfr) - assigned. - 0002053: [Core: Extensions] qSlicerExtensionsManagerModelTest - Re-activate "readonly" test on windows. (jcfr) - assigned. - 0002032: [Core: Extensions] Extension description file should probably be generated using the "read-only" URL type systematically (jcfr) - assigned. - 0003051: [Core: Extensions] CLI from extensions are not working (jcfr) - resolved. - 0003096: [Core: Building (CMake, Superbuild)] Can not Run debug in Visual studio 2008 (jcfr) - resolved. - 0002528: [Module Diffusion] Slicer crashes when LUT changed (alexy) - resolved. - 0002796: [Core: Base Code] PET Lookup table is missing from 4.2.1 (nicole) - assigned. - 0002326: [Core: Base Code] Save Data should always make unique filenames (pieper) - resolved. - 0003103: [Core: Building (CMake, Superbuild)] Slicer does not build on Ubuntu 13.04 (jcfr) - resolved. - 0002761: [Core: GUI] Add dental CBCT sample data (pieper) - resolved. - 0003064: [Core: Building (CMake, Superbuild)] error PRJ0019: A tool returned an error code from "Performing build step for 'Slicer'" (jcfr) - resolved. - 0003047: [Core: Base Code] transforms don't trigger re-render on change (alexy) - resolved. - 0001180: [Core: Base Code] Slicer might load the wrong Python and other dlls (jcfr) - resolved. - 0003088: [Core: Extensions] Extensions cannot be installed because of continuous refreshing (jcfr) - resolved. - 0002946: [Core: MRML] Add Point/Line thickness for models (finetjul) - resolved. - 0003009: [Core: Base Code] Slice compositing pipeline not respecting color table alpha values (alexy) - resolved. - 0001826: [Core: Command Line Modules (Modules/CLI)] Misleading usage information in "Output Settings" of "General Registration" module (hjmjohnson) - resolved. - 0003071: [Module BRAINSFit] Brainsfit crashes (pieper) - resolved. - 0002916: [Core: MRML] Fix vtkSlicerModelsLogicAutoRemoveTest (alexy) - resolved. - 0002954: [Core: Building (CMake, Superbuild)] Missing frameworks when building extension on MacOSX (jcfr) - resolved. - 0003045: [Core: Extensions] Extension Manager - Open external link in the browser (jcfr) - resolved. - 0002058: [Core: Building (CMake, Superbuild)] Scripted module should be located in their own source directory (jcfr) - resolved. - 0002993: [Core: Base Code] Setting "automatic" for spacing (and fov) not implemented? (snape) - resolved. - 0003065: [Core: Base Code] ImportError: No module named Tkinter (jcfr) - resolved. - 0002002: [Core: Building (CMake, Superbuild)] Support for VS2010 (Lchauvin) - resolved. - 0002121: [Core: Building (CMake, Superbuild)] Python building for Slicer4 64bits with VS2010 (jcfr) - resolved. - 0003036: [Module ModelMaker] Can't save as .stl or .ply from Grayscale Model Maker in Windows 64 bit version (nicole) - resolved. - 0002489: [Core: Base Code] Crash on closing when OpenIGTLink connector node in scene (tokuda) - resolved. - 0003034: [Module N4ITKBiasFieldCorrection] N4ITKBiasFieldCorrection - tweak accessibly and default of parameters (fedorov) - resolved. - 0002930: [Core: Usability] labelmaps created in Slicer4 off by one slice (pieper) - resolved. - 0003041: [Core: Building (CMake, Superbuild)] Nightly build: shared library path is messed up (jcfr) - resolved. - 0003015: [Core: Command Line Modules (Modules/CLI)] can't run CLI because ITKv4 IO objects not registered (jcfr) - resolved. - 0002727: [Core: MRML] Implementing node references is complex and error-prone (alexy) - resolved. - 0002747: [Module DICOM] Crash when importing series with certain string encoding (pieper) - resolved. - 0002631: [Module DICOM] Can't cancel DICOM module startup dialog (pieper) - resolved. - 0003016: [Core: Base Code] Saving to network drive/mount does not work (vtkPNGWriter, both Linux and Windows) -- and no error message (jcfr) - resolved. - 0002931: [Module Tractography] restrict a tract by a second ROI (Region Of Interest). (demian) - resolved. - 0002007: [Core: Building (CMake, Superbuild)] Build against ITKv4 and remove ITKv3 (jcfr) - resolved. - 0002801: [Core: Building (CMake, Superbuild)] Check Slicer packaging on Windows 32bit when built against ITKv4 (pieper) - resolved. - 0002883: [Core: Building (CMake, Superbuild)] Fix FindDCMTK.cmake provided by ITKv4 (hjmjohnson) - resolved. - 0002806: [Core: Extensions] Check that extensions can be built with Slicer ITKv4 (jcfr) - resolved. - 0002116: [Core: Extensions] Improve extension framework to differentiate extension build against different Slicer. (jcfr) - resolved. - 0002115: [Core: Building (CMake, Superbuild)] Mechanism to customize Slicer package name depending on build option (jcfr) - resolved. - 0002804: [Core: Building (CMake, Superbuild)] Check Slicer packaging on MacOSX when built against ITKv4 (hjmjohnson) - resolved. - 0002807: [Core: Building (CMake, Superbuild)] itkTestMain.h is not available anymore in ITKv4. (hjmjohnson) - resolved. - 0002114: [Core: Building (CMake, Superbuild)] Ensure Slicer can be compiled against ITKv4 on both Windows 32 and 64 bit (mccormic) - resolved. - 0002813: [Core: Base Code] Restore performance of ITKv4 Factory (mccormic) - resolved. - 0002729: [Core: Base Code] Recent ITK changes may have broken Slicer4/ITKv4 - Slicer can't seem to read volumes (mccormic) - closed. - 0002805: [Core: Building (CMake, Superbuild)] Ensure the DCMTK external project of Slicer is used to build ITKv4 (hjmjohnson) - resolved. - 0002800: [Core: Building (CMake, Superbuild)] Create External_DWIConvert.cmake (hjmjohnson) - resolved. - 0002884: [Core: Building (CMake, Superbuild)] Windows / ITKv4 - When building, it complains with "illegal parameter from the moc.exe" (jcfr) - closed. - 0002729: [Core: Base Code] Recent ITK changes may have broken Slicer4/ITKv4 - Slicer can't seem to read volumes (mccormic) - closed. - 0001347: [Core: GUI] Small bugs in the module selector (crmullin) - resolved. - 0002698: [Core: Building (CMake, Superbuild)] Git clone warning - Invalid escape sequence \U (jcfr) - resolved. - 0002978: [Core: Building (CMake, Superbuild)] Build error & unstable executable on linux (jcfr) - resolved. - 0002976: [Core: Extensions] Extensions Manager hangs when a category is selected (jcfr) - resolved. - 0002889: [Core: Building (CMake, Superbuild)] Setup dashboard script to build Slicer packages + extensions from "factory-south" (crmullin) - resolved. - 0002882: [Core: Building (CMake, Superbuild)] Expose variable like vtkITK_INCLUDE_DIRS in SlicerConfig.cmake (jcfr) - resolved. - 0002957: [Core: Building (CMake, Superbuild)] CMake hangs on OSX (jcfr) - resolved. - 0002961: [Core: Packaging] license file is missing from windows installer (jcfr) - resolved. - 0002950: [Core: Base Code] Depends on VTK 5.10.1 (jcfr) - resolved. - 0002888: [Core: Building (CMake, Superbuild)] If -DSlicer_USE_GIT_PROTOCOL:BOOL=OFF is passed, system should check if "insteadOf" rule is set for ITK (crmullin) - resolved. - 0002764: [Core: Base Code] Running test AtlasTest lead to some suspiscious warning "There is a danger here" (alexy) - resolved. - 0001670: [Core: Usability] Add "copy CTRL+C", "cut CTRL+X" and "paste CTRL+V" in Edit menu bar (crmullin) - resolved. - 0001916: [Module Annotations] Exporting and re-importing a ROI fails (alexy) - resolved. - 0002759: [Module Endoscopy] Endoscopy view does not work after closing and opening a scene (alexy) - resolved. - 0001900: [Core: Base Code] Crash when loading image with very long filename (crmullin) - resolved. - 0002746: [Core: MRML] Dangerous duplicate code in vtkMRMLGlyphableVolumeSliceDisplayNode (demian) - resolved. - 0002440: [Module Diffusion] Tractography Display: various GUI elements fail (demian) - resolved. - 0002639: [Core: Base Code] Slicer does not seem to unload old volumes (alexy) - resolved. - 0001389: [Module Diffusion] Tract Visibility (alexy) - resolved. - 0002758: [Core: MRML] camera referential not loaded (alexy) - resolved. - 0002647: [Core: Building (CMake, Superbuild)] Create a macro named slicerMacroBuildScriptedModule (jcfr) - resolved. - 0002927: [Core: Building (CMake, Superbuild)] Update SimpleITK to 0.6.1 (jcfr) - resolved. - 0002860: [Core: Building (CMake, Superbuild)] Build Fail during libPythonQt, cannot recognize QtWebKit (jcfr) - resolved. - 0002862: [Core: Building (CMake, Superbuild)] Failure to recognize qmake on cmake (jcfr) - resolved. - 0002899: [Core: Building (CMake, Superbuild)] Python library gets installed in wrong directory on OpenSuse 12.2 (sankhesh) - resolved. - 0002897: [Core: Base Code] Fix Scalar overlay in Models module (finetjul) - resolved. - 0001726: [Core: Documentation & Wiki] Update link allowing to download Qt Binaries (jcfr) - resolved. - 0001727: [Core: GUI] Improve QProxyStyle (finetjul) - resolved. - 0002890: [Core: Building (CMake, Superbuild)] Migrate Windows VM on "factory-south" (crmullin) - resolved. - 0002803: [Core: Building (CMake, Superbuild)] Check Slicer packaging on Linux when built against ITKv4 (hjmjohnson) - resolved. - 0002381: [Module Diffusion] color of glyphs on slices looks wrong (demian) - resolved. - 0002371: [Core: Building (CMake, Superbuild)] Update factory ITKv4 nightly script to enable packaging (crmullin) - resolved. - 0002115: [Core: Building (CMake, Superbuild)] Mechanism to customize Slicer package name depending on build option (jcfr) - resolved. - 0002372: [Core: Building (CMake, Superbuild)] Coordinate ITKv4 packaging with maintainer of download.slicer.org (crmullin) - resolved. - 0002695: [Core: Building (CMake, Superbuild)] Update DCMTK version to fix VS2010 build issue (jcfr) - resolved. - 0002290: [Module DICOM] Importing DICOM - "return key" should not be bound to "ok" (finetjul) - resolved. - 0001735: [Module Annotations] Annotation widget does not maintain collapsed state after refresh. (nicole) - resolved. - 0002782: [Core: Building (CMake, Superbuild)] Failed to build on MacOSX 10.8 - DYLD_ environment variables being ignored because main executable (/bin/ps) is setuid or setgi (jcfr) - resolved. - 0001635: [Core: Base Code] Failed to execute CLI executable - Missing _nv000007gl symbol (jcfr) - resolved. - 0002760: [Core: QtTesting] building with QT Testing turned off fails (jcfr) - resolved. - 0002701: [Module Annotations] Visibility of Annotation node programmatically added can NOT be toggled (nicole) - resolved. - 0001935: [Core: Base Code] image interpoaltion issues in 2d views (millerjv) - resolved. - 0001931: [Core: GUI] Disabling antialisasing doesn' t work (millerjv) - resolved. - 0002096: [Core: GUI] transform node disappears when volume is dropped inside (finetjul) - resolved. - 0001440: [Core: GUI] Auto single step for the threshold sliders in the Volumes module (finetjul) - resolved. - 0002627: [Core: Building (CMake, Superbuild)] Link module python library with dependent module python libraries (jcfr) - resolved. - 0001588: [Module SceneViews] Scene view restore issue (finetjul) - resolved. - 0002497: [Core: Usability] color name not being set when editing in the Colors module (finetjul) - resolved. - 0002270: [Module VolumeRendering] build Slicer on windows 7 with a 4gb graphic card FIXED (finetjul) - resolved. - 0001796: [Module Annotations] inconsistent fiducial glyph (nicole) - resolved. - 0001196: [Core: Usability] Freeze after loading large stl model (finetjul) - resolved. - 0002187: [Core: QtTesting] Do not used "activated" signal since it doesn't map to "clicked" in a cross platform fashion (finetjul) - resolved. - 0002156: [Core: Documentation & Wiki] QtTest - Add "rules for developer" to the wiki (finetjul) - assigned. - 0002343: [Core: Base Code] Implement last test in qMRMLColorPickerWidgetTest2 (finetjul) - resolved. - 0002122: [Core: Base Code] Fix unused variable warnings related to ctkSettingsDialog (finetjul) - resolved. - 0001810: [Module Annotations] Nothing happens when changing X in Advanced Points tab in annotation edit dialog (nicole) - resolved. - 0002183: [Core: Documentation & Wiki] Create mediawiki template to link back with appropriate doxygen documentatation (jcfr) - resolved. - 0002335: [Core: Extensions] Add support for tutorial URL (jcfr) - closed. - 0003098: [Core: Scripting (Wrapping, Python)] When launching a slicelet, infinite windows of the slicelet spawn (jcfr) - closed. - 0002999: [Core: GUI] Default slice position is not centered on the slice (pieper) - closed. - 0002459: [Core: GUI] DCMTK Destructor issue - Double Free or corruption when exiting Slicer4 (jcfr) - closed. - 0003008: [Core: Command Line Modules (Modules/CLI)] Executable CLI modules fail to start (jcfr) - closed. - 0003048: [Core: Building (CMake, Superbuild)] Crash at start (jcfr) - closed. - 0003040: [Core: Building (CMake, Superbuild)] Building DCMTK in shared mode prevents crash at startup (jcfr) - closed. - 0003089: [Core: Extensions] SlicerAppStore website is broken (jcfr) - closed. - 0002020: [Core: Building (CMake, Superbuild)] Report revision number at configuration time (jcfr) - closed. - 0002046: [Core: Base Code] Support for Qt 4.8.1 (jcfr) - closed. - 0002557: [Core: GUI] Models hierarchy: whenever the eye is clicked on a node complex hierarchy, the whole interface refreshes collapsing all nodes (sankhesh) - closed. - 0003055: [Core: Building (CMake, Superbuild)] SimpleITK python bindings won't install (jcfr) - closed. - 0002453: [Module Editor] Non-closed drawing contour line remains solid when changing slices (pieper) - closed. - 0002421: [Module Editor] 'e' keystroke does not work (pieper) - closed. - 0001893: [Core: Base Code] Download of Sample MR head data failed (pieper) - closed. - 0001948: [Core: Usability] if SampleData download fails, suggest clearing/enlarging the cache (pieper) - closed. - 0003052: [Core: Building (CMake, Superbuild)] cannot load any sample data - urllib not build correctly (jcfr) - closed. - 0003023: [Module Diffusion] DWI convert doesn't work as a shared library (hjmjohnson) - closed. - 0002983: [Module DICOM] DICOM browser doesn't show up on clicking the DCM button when DICOM module is active (pieper) - closed. - 0003042: [Module Editor] merge and build stopped building models (jcfr) - closed. - 0001318: [Core: GUI] modified resolution, pan and zoom behavior in 3D windows (alexy) - closed. - 0003037: [Core: Building (CMake, Superbuild)] Change Repositories for OpenIGTLink and OpenIGTLinkIF (jcfr) - closed. - 0002083: [Core: Usability] Add orientation information in qMRMLVolumesInfoWidget (crmullin) - closed. - 0002869: [Core: MRML] Direction Matrix not exposed in volume info widget (wangk) - closed. - 0002881: [Core: MRML] qMRMLVolumeInfoWidget not updated after MRML node removed (alexy) - closed. - 0002936: [Module DICOM] Multiple RT objects with same type not distinguishable in DICOM module (pieper) - closed. - 0002949: [Module SceneViews] Scenview does not initiallize streamlines properly (nicole) - closed. - 0002878: [Core: GUI] slice locations are at pixel boundaries instead of pixel centers after SnapSliceOffsetToIJK (pieper) - closed. - 0002218: [Core: Building (CMake, Superbuild)] Re-write history associated to master-411 branch (jcfr) - closed. - 0002951: [Core: Base Code] Update test framework to call initialize ITKIOFactoryRegistration when needed (jcfr) - closed. - 0002956: [Core: GUI] color picker initial color is black the first time the color dialog opens (finetjul) - closed. - 0001657: [Module VolumeRendering] GPU Volume rendering freezes my computer (finetjul) - closed. - 0002802: [Core: Building (CMake, Superbuild)] Check Slicer packaging on Windows 64bit when built against ITKv4 (pieper) - closed. - 0001631: [Core: GUI] slice visibility in 3d viewer is wrong (millerjv) - closed. - 0001434: [Module Diffusion] DicomToNrrd issues with Philips data (demian) - closed. - 0002295: [Module Diffusion] tubes reder defaults are different (demian) - closed. - 0001298: [Module VolumeRendering] ROI rotation does not apply to VR cropping (finetjul) - closed. - 0002635: [Module DICOM] Non dicom volume load (pieper) - closed. - 0002332: [Module Diffusion] slicer intersection of streamlines has stopped working (inorton) - closed. - 0002004: [Module Editor] Crash when using editor undo in 32-bit Slicer (pieper) - closed. - 0002173: [Core: Base Code] Image orientation is ignored when reading metaimage files (pieper) - closed. - 0001283: [Core: Base Code] trying to zoom has strange consequences (millerjv) - closed. - 0002315: [Core: Usability] OpenIGTLink socket useless in reloaded scene (tokuda) - closed. - 0001822: [Module Editor] Split volume results corrupted (pieper) - closed. - 0001413: [Module Annotations] The glyphs for fiducials look different in the slice viewers and the compare viewers (millerjv) - closed. - 0002768: [Core: Extensions] Slicerappstore - Fix filtering (jcfr) - closed. - 0002240: [Core: Usability] Mounted volumes are not accessible in "Add file" dialog on Mac (sankhesh) - closed. - 0002247: [Core: Base Code] Rename qSlicerMODULE_NAMEModule.ui into qSlicerMODULE_NAMEModuleWidget.ui (crmullin) - closed. - 0002795: [Module DICOM] thumbnails do not show in the dicom browser (finetjul) - closed. - 0002376: [Core: Base Code] Inconsistent behavior of Slicer launcher command options output across systems (jcfr) - closed. - 0002934: [Core: Base Code] Console output logging for Windows (jcfr) - assigned. - 0001537: [Core: Base Code] Exit from tcl adapter causes seg fault when exiting program (jcfr) - closed. - 0002790: [Core: Packaging] nightlies version is displayed 4.2.0 (jcfr) - closed. - 0002863: [Core: GUI] Error message "File ... qSlicerBaseQTCore_fr.qm" doesn't exist." when starting Slicer (jcfr) - closed. - 0002911: [Core: Extensions] extension manager lists many extensions multiple times (jcfr) - closed. - 0002871: [Core: Base Code] crash in error log during multi-threaded imports (jcfr) - closed. - 0001891: [Core: Command Line Modules (Modules/CLI)] General Registration BRAINS: It is not possible to set (ROI)MaskingInputFixed as well as (ROI)MaskingInputMoving (hjmjohnson) - closed. - 0002909: [Core: GUI] Harden Transform from Transforms module (finetjul) - closed. - 0002577: [Module Diffusion] Problems with the tractography display (demian) - closed. - 0002848: [Core: Extensions] Extension fails to initialize on Mac (jcfr) - closed. - 0002846: [Module VolumeRendering] volume renderer does not initialize properly with multivolume (finetjul) - closed. - 0001765: [Core: Building (CMake, Superbuild)] fresh build needs to run twice to build numpy (pieper) - closed. - 0002819: [Core: GUI] keypad not working to edit names (jcfr) - closed. - 0002824: [Module Diffusion] perpendicular diffusivity scalar extraction does not work (demian) - closed. - 0002826: [Core: Extensions] pagination in extension wizard is not appropriate (jcfr) - closed. - 0002812: [Module DICOM] Initialize default location for DICOM DB (pieper) - closed. - 0002783: [Core: MRML] Color names that contain spaces are not correctly set when loading a scene (alexy) - closed. - 0002833: [Core: Extensions] itkTestMain.h is missing in ITKv4 (jcfr) - closed. - 0002840: [Core: GUI] when add new hierarchy nodes, they're collapsed in the tree view by default (sankhesh) - closed. - 0001639: [Core: Packaging] cannot find libITKDeprecated-4.0.so.1 (hjmjohnson) - closed. - 0001655: [Core: Base Code] Allow different module paths definition for each Slicer instance (jcfr) - closed. - 0002797: [Module VolumeRendering] Volume rendering doesn't handle short scalar range images (finetjul) - closed. - 0002448: [Core: Building (CMake, Superbuild)] Can't compile with CLang on OS X (hjmjohnson) - closed. - 0001584: [Core: GUI] Simplified initial presentation of the brainsfit module (hjmjohnson) - closed. - 0001502: [Core: Usability] Load images from command line no longer works (crmullin) - closed. - 0001926: [Core: GUI] can not toggle interpolate on or off in slice viewer (millerjv) - closed. - 0002266: [Module Annotations] need to change properties for fiducial list (nicole) - closed. - 0002592: [Core: Usability] Rename TractographyFiducialSeedingModule into TractographyInteractiveSeedingModule (sankhesh) - closed. - 0002651: [Core: Building (CMake, Superbuild)] Clean and review support for CLI written in Java (jcfr) - closed. - 0002321: [Core: Building (CMake, Superbuild)] Fix gcc 4.6.x link error related to libvtkPythonCore.so.5.10.0 - undefined reference to `Py*' (sankhesh) - closed. - 0002351: [Core: Extensions] Scripted modules appear in an inconsistent directory location when building multiple modules in a single extension (jcfr) - closed. - 0002626: [Core: Base Code] Uniformize Get/New/Create/CreateAndAdd (finetjul) - closed. - 0002366: [Core: Base Code] Saving scene in a bundle file generates invalid mrb file on Windows (finetjul) - closed. - 0002112: [Module Annotations] Need to allow changing fiducial properties all at once in a fiducial list (nicole) - closed. - 0002463: [Core: Usability] Reformat module doesn't enforce entered value (finetjul) - closed. - 0002158: [Core: Extensions] Rename variable referring to slicer extension as "sext" (jcfr) - closed. - 0001816: [Core: Usability] Order of items added in Add Data is reversed (finetjul) - closed. - 0002057: [Core: MRML] Crash when closing scene (alexy) - closed. - 0001653: [Core: Usability] GUI for Reformat widget (finetjul) - closed. - 0002141: [Core: Base Code] Color module damages LUT (finetjul) - closed. - 0002476: [Core: GUI] Loading Data with Long Filename Forces Slice Views to Resize Very Small (sankhesh) - closed. - 0001807: [Module VolumeRendering] Trying to render a volume with double type crashes Slicer (finetjul) - closed. - 0002280: [Core: Building (CMake, Superbuild)] Numpy - Do not expect developer to uninstall g77 (jcfr) - closed. - 0002167: [Core: Building (CMake, Superbuild)] Unnecessary python wrapping on Visual Studio (jcfr) - closed.
- 0002498: [Module DICOM] Import / LocalDatabase usability (not clear) (pieper) - acknowledged. - 0003122: [Core: Base Code] Add ability to flip polygon normals - either use or clean up old code (jcfr) - assigned. - 0003116: [Core: Building (CMake, Superbuild)] Add CMake module to check if Ubuntu custom FindPythonLibs is used (jcfr) - assigned. - 0003110: [Core: Usability] loading files - assigned. - 0003049: [Core: Base Code] Release a dev package for Slicer (jcfr) - assigned. - 0002794: [Core: Base Code] fast startup slice viewer (jcfr) - assigned. - 0003026: [Core: MRML] Threshold setting is not applied on scene view restore (pieper) - assigned. - 0002935: [Core: GUI] Add back orientation markers in 2D slice viewers (millerjv) - assigned. - 0002947: [Core: GUI] Color models by cell field arrays (jcfr) - assigned. - 0002923: [Core: Extensions] MacOSX - Slicer's additional module paths are user-dependent but extensions are not (jcfr) - assigned. - 0002921: [Core: Usability] Provide visual feedback when a selt test run within Slicer failed (pieper) - assigned. - 0002920: [Core: Extensions] Possibility to run a post install script (jcfr) - assigned. - 0002437: [Core: GUI] Use ctkPathListWidget in modules settings panel (sankhesh) - assigned. - 0001541: [Core: Usability] allow to hide last step button in wizard GUI (jcfr) - assigned. - 0001869: [Module SceneViews] Unfriendly behavior handling new scene elements (nicole) - assigned. - 0002327: [Module ModelMaker] "Generate All Models" in sub-optimal parameter group (nicole) - assigned. - 0001737: [Core: MRML] Non-polyhedral region of interest (nicole) - assigned. - 0002341: [Core: Base Code] Fix camera reset in vtkMRMLViewDisplayableManager (pieper) - assigned. - 0001336: [Core: Base Code] Refactor MRML library to use multiple inheritance (jcfr) - assigned. - 0001335: [Core: Building (CMake, Superbuild)] VTK python - Check if python wrapping is mulit-inheritance-friendly (jcfr) - assigned. - 0001232: [Core: Scripting (Wrapping, Python)] Allow python modules to expose public functions (jcfr) - resolved. - 0001380: [Core: Base Code] Update vtkMRMLDisplayableNode::PolyData API (finetjul) - resolved.
