Difference between revisions of "2014 Summer Project Week:Pipeline Visualization"

From NAMIC Wiki
Jump to: navigation, search
 
(3 intermediate revisions by 2 users not shown)
Line 3: Line 3:
 
Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
 
Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
 
Image:Pipeline_visualization_sketch.png‎| Visualization of pipeline from code
 
Image:Pipeline_visualization_sketch.png‎| Visualization of pipeline from code
 +
Image:atlas_pipeline.png|BRAINSTools Template pipeline
 
</gallery>
 
</gallery>
  
Line 13: Line 14:
 
At the project week, we plan to improve the visualization and features and release our code.  
 
At the project week, we plan to improve the visualization and features and release our code.  
  
http://shoutkey.com/underline
+
Live demo (temporary link): http://shoutkey.com/grant
  
 
<div style="margin: 20px;">
 
<div style="margin: 20px;">
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
<h3>Objective</h3>
 
<h3>Objective</h3>
We plan to show our demo and get feedback to improve the visualization. Additionally, if time permits, we want to start work on combining this with our lightweight interface to nipype for prototyping pipelines.
+
We plan to show our demo and get feedback to improve the visualization.  
 
</div>
 
</div>
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
<div style="width: 27%; float: left; padding-right: 3%;">
Line 27: Line 28:
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
<h3>Progress</h3>
 
<h3>Progress</h3>
 +
* Code on github: https://github.com/rameshvs/nipype/tree/visualization-serverhttps://github.com/rameshvs/nipype/tree/visualization-server
 +
* Worked with Dave to visualize Iowa BRAINS pipeline (see screenshot)
 
</div>
 
</div>
 
</div>
 
</div>

Latest revision as of 13:53, 27 June 2014

Home < 2014 Summer Project Week:Pipeline Visualization

Key Investigators

  • Ramesh Sridharan, Adrian Dalca, Polina Golland, MIT

Project Description

We have developed an extension to nipype (http://nipy.sourceforge.net/nipype/) that allows for visualization of pipelines and their results. At the project week, we plan to improve the visualization and features and release our code.

Live demo (temporary link): http://shoutkey.com/grant

Objective

We plan to show our demo and get feedback to improve the visualization.

Approach, Plan

  • Release code / integrate with nipype codebase
  • Discuss wishlist for visualization (come see me if you have any thoughts!)

Progress