View source for Engineering:2005 Programming Week Results


==Summary==
The first NA-MIC Programming Week was successfully concluded on June 30, 2005 at MIT. It recorded 56 attendees, 38 of whom were NA-MIC participants and 18 were collaborators. During the project event, 22 projects were actively pursued by the participants

[[Media:2005_Programming_Week_Summary.ppt|Consolidated Summary Slides (ppt) for Programming Week]]

[[Engineering:Programmers_Week_Summer_2005|Link to actual Programming Week Event, MIT Summer, 2005]]

== Submissions to Insight Journal ==

# [http://hdl.handle.net/1926/39 A Quantitative DTI Fiber Tract Analysis Suite]
# [http://hdl.handle.net/1926/44 Knowledge-Based Segmentation of Brain MRI Scans Using the Insight Toolkit]
# [http://hdl.handle.net/1926/35 Tetrahedral mesh generation for medical imaging]
# [http://hdl.handle.net/1926/49 Comparison of Salient Point Detection Methods for 3D Medical Images]

== One-Slide Summary from Programming Week Projects ==

=== Applications ===

# [[Media:Prog_week_05_nonrigid_epi_registration_2.ppt|Non Rigid EPI Registration Powerpoint]]<nowiki>: Source in Sandbox </nowiki>
# [[Media:Namic-tractanalysis.ppt|Quantitative Fiber Tract Analysis Powerpoint]]<nowiki>: Source in Sandbox, some code incorporated into FiberViewer </nowiki>
# [[Media:DLPFCTemplate.ppt| Rule-based DLPFC Segmentation Powerpoint]]<nowiki>: Source in Sandbox </nowiki>

=== Algorithms/Algorithm Infrastructure ===

# [[Media:Slide1.ppt|3D Adaptive Tetrahedral Mesh Generation in ITK]]<nowiki>: Source in sandbox </nowiki>
# [[Media:SlideBlloydnew.ppt|2D/3D Point-Landmark Detection]]
# [[Media:ProgWeek05ProjectDescShapeDesc.ppt| Shape Description]]<nowiki>: Source code in sandbox, submission to insight journal soon, some visualization code incorporated back into SOViewer </nowiki>
# [[Media:ProgWeek05ProjectDescStatShapeAnalFrame.ppt| Shape Analysis]]<nowiki>: Not yet in coding stage </nowiki>
# [[Media:BayesianProgWeekProject.ppt| Bayesian Segmentation]]<nowiki>: Source in ITK CVS repository and NAMIC SandBox </nowiki>
# [[Media:FluxDiffusion.ppt| Flux Diffusion]]

=== Software Infrastructure ===

# [[Media:ITKuProjectPlan.ppt|ITKu| Software Infrastructure: ITKu]]<nowiki>: Source in sourceforge teem repository (itku module: cvs.sourceforge.net:/cvsroot/teem co itku) </nowiki>
# [[Media:Namic-nrrdIO.ppt|Software Infrastructure: NRRD IO]]
# [[Media:Prog_week_dtmri_test.ppt|Software Infrastructure: Slicer DTMRI Nightly Testing]]
# [[Media:ProgWeek05ProjectDescLONI.ppt|Software Infrastructure: LONI Pipeline Integration of UNC Shape Analysis Pipeline]]<nowiki>: LONI example pipelines in Sandbox </nowiki>
# [[Media:2005_UCSD_ProgrammingWeek-final.ppt|Software Infrastructure: Large Scale Algorithm Job Submission via Condor]]
# [[Media:Slicer-architecture-discussion-followup.ppt|Slicer 3.0 Architecture Kickoff]]

=== Additional NA-MIC Engineering Interactions / Benefits ===

* Registration
** Linear and Non-Linear vtkITK Registration Modules Now Available in Slicer
* I/O
** vtkITK based Generic Readers in Slicer
** vtkNRRDReader handles measurement frames, space directions, gradients for DWI
* fMRI
** ITK Statistics framework underway
* Editor
** Collaboration with Simbios NCBC at Stanford to adapt Slicer Editor for Musculoskeletal MRI