View source for NA-MIC/Projects/Collaboration/NIREP: Non-rigid Image Registration Evaluation

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===Key Investigators===
*Gary Christensen, Iowa <gary-christensen@uiowa.edu> (NIREP PI)
*Jeffrey Hawley <woofton_9@eaglescrag.net> (NIREP software developer)
*Ying Wei <wywendy2000@gmail.com> (NIREP software developer)
*Kate Rasing <kate@spicybrains.org> (NIREP software developer)
*Julien Jomier, Kitware
*Bill Hoffman
*Sebastien Barre, Kitware
*Jim Miller
*Luis Ibanez, Kitware (image registration regression testing, Cpack, and ITK)

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<h1>Objective</h1>
We have started the Non-rigid Image Registration Evaluation Project (NIREP) to develop software tools and provide shared image validation databases for rigorous testing of non-rigid image registration algorithms. NIREP will extend the scope of prior validation projects by developing evaluation criteria and metrics using large image populations, using richly annotated image databases, using computer simulated data, and increasing the number and types of evaluation criteria. 

The goal of this project is to establish, maintain, and endorse a standardized set of relevant benchmarks and metrics for performance evaluation of nonrigid image registration algorithms. Furthermore, these standards will be incorporated into an exportable computer program to automatically evaluate the registration accuracy of nonrigid image registration algorithms.

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<h1>Approach, Plan</h1>

We plan to do the following tasks to improve the NIREP software package:
surfaces, etc. into a composite image.
*Redesign the Database Manager and investigate how database managers are implemented in other tools.
*Learn the best way to break the VTK & ITK pipelines
*Implement streaming of images in NIREP software
*Learn how other tools combine images, landmarks, contours, 
*Use CPack to package the NIREP program.
*Setup and use a DART Dashboard at Iowa
*Investigate integration of wxWidgets with ITK and VTK.


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<h1>Progress</h1>
* 6/12
** Dashboard is [http://dashboard.nirep.org installed] on the server
*** The installation needs to be tested with CDashTest -- the project appears to be misconfigured.
* 6/13
** The NIREP web server seems to be offline
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===References===
This work was supported in part by NIH grants EB004126, CA096679 and HL64368.

* [http://www.nirep.org Link to NIREP web site: ]
* [http://www.consort-statement.org/Initiatives/newstard.htm The STARD Initiative -- Towards Complete and Accurate Reporting of Studies on Diagnostic Accuracy ] 
* [http://idm.univ-rennes1.fr/VMIP/SPIE2007_gb.html SPIE Medical Imaging: Validation in Medical Image Registration Workshop, Feb. 18, 2007] 
* [http://ieeexplore.ieee.org/xpl/tocresult.jsp?isYear=2006&isnumber=36137&Submit32=Go+To+Issues IEEE Transactions on Medical Imaging, Special Issue on Validation in Medical Image Processing 25(11), Nov. 2006 (need access to IEEE explore to view papers) ]
* [http://ieeexplore.ieee.org/iel5/42/27515/01225846.pdf P. Hellier, C. Barillot, I. Corouge, B. Gibaud, G. Le Goualher, D. L. Collins, A. Evans, G. Malandain, N. Ayache, G. E. Christensen, and H. J. Johnson, Retrospective Evaluation of Intersubject Brain Registration, IEEE Transactions on Medical Imaging, 22(9) 2003, pp. 1120-1130 (need access to IEEE explore to view paper) ] 
* [http://idm.univ-rennes1.fr/VMIP/ressourcesgb.html P. Jannin, C. Grova, C.R. Maurer, Model for defining and reporting reference-based validation protocols in medical image processing, International Journal of Computer Assisted Radiology and Surgery, 1(2), August 2006. ]
* [http://idm.univ-rennes1.fr/VMIP/ressourcesgb.html P. Jannin, M. Fitzpatrick, D. Hawkes, X. Pennec, R. Shahidi, and M.W. Vannier, Editorial: Validation of Medical Image Processing in Image-Guided Therapy, IEEE Transactions on Medical Imaging, 21(11), 2002, pp. 1445-1449. ]