View source for Proposed work pipeline

# Ginger: produce ICC mask for chosen template: Gucci
# Andriy: use BRAINSfit to align all other sbjects to template through Affine + BSpline
# Ginger: compute average of the aligned subjects and manual separate to GM, WM + CSF
# Ron: manually segment sub-cortical structures.
 
# Ginger: produce Slicer3 module for back propagation and manual correct the results
 
# Ginger: smooth back propagation results to generate final templates

# Andriy: register atlas to each subjects and apply resulting transformation to align atlas to each subjects

# Ginger: finalize by EM segmentation.


Meanwhile: Ginger will perform EM segmentation on Gucci to separate into WM, GM, CSF and Ron helps to segment sub-cortical structures.