View source for UNC SPHARM-PDM Tutorial

[[Image:SPHARMPDM_Logo.gif |SOME OUTPUTS: Triangular mesh representation of the input segmentation - The first triangular mesh,mapped in the sphere - Spherical representation of the harmonic representation of the input parameterization - RawP colorMap - DistanceMap colorMap(after MANCOVA) and Particle |300px|thumb|right]] 



= ShapeAnalysisModule=

==Overview==

Shape analysis has become of increasing interest to the medical community due to its potential to precisely locate morphological changes between healthy and pathological structures. SPHARM-PDM is a tool that computes point-based models using a parametric boundary description for the computing of Shape analysis.
The point-based models computed with the SPHARM-PDM tool can be used in combination with the also UNC designed statistical tool 
[[UNC MANCOVA Tutorial| shapeAnalysisMANCOVA]] to perform quantitative morphological assessment of structural changes at speciﬁc locations.
* '''Step by step analysis''': With the ShapeAnalysisModule tutorial,you will learn how to load input volumes, run the module to generate triangulated surfaces with inherent correspondences and visualize them thanks to an intuitive quality control. Indeed,compared with previous versions, the ParticleModule is now part of ShapeAnaysisModule.


==Tutorials==

'''ShapeAnalysisModule tutorial''' :  to perform structural shape analysis.[[Media:ShapeAnalysisModule-Tutorial.ppt|‏ [ppt]]][[Media:ShapeAnalysisModule-Tutorial.pdf|‏ [pdf]]]



==Software==

[http://www.slicer.org/pages/Downloads Slicer3.6.3]

[http://www.nitrc.org/frs/?group_id=308 Slicer3 External modules   -including BatchMake Description files]


==Tutorial materials==



'''ShapeAnalysisModule data ''': 
*[http://www.nitrc.org/docman/index.php?group_id=308&selected_doc_group_id=760&language_id=1#folder Link to NITRC ] 
* or directly here :[[Media:ShapeAnalysisModuleTutorialData_TutorialContestSummer2011.zip|‏ ShapeAnalysisModuleTutorialData_TutorialContestSummer2011.zip]]



==Complementary documentation==

* Joshua Cates, Manasi Datar, P Thomas Fletcher and Ross Whitaker, [https://gforge.sci.utah.edu/gf/project/shapeworks/frs/?action=FrsReleaseBrowse&frs_package_id=4 ShapeWorksManual]
* Martin Styner, Ipek Oguz, Shun Xu, Christian Brechb¨hler, Dimitrios Pantazis, Guido Gerig, [[http://www.google.com/url?sa=t&source=web&cd=1&ved=0CBsQFjAA&url=http%3A%2F%2Fciteseerx.ist.psu.edu%2Fviewdoc%2Fdownload%3Fdoi%3D10.1.1.123.4306%26rep%3Drep1%26type%3Dpdf&rct=j&q=Statistical%20Shape%20Analysis%20of%20Brain%20Structures%20using%20%20%20%20%20%20%20%20%20%20%20%20%20%20%20%20%20%20%20SPHARM-PDM&ei=pi3pTYBWw-DRAbr-5bcB&usg=AFQjCNGrxZqRx0o11lMsULIPCJI6J728Gw&sig2=VzPjzlOFiwiOw3UJmOFgJQ Statistical Shape Analysis of Brain Structures using SPHARM-PDM]]

==People==
Lucile Bompard 
<br>Clement Vachet
<br>Beatriz Paniagua
<br>Martin Styner


==[http://wiki.na-mic.org/Wiki/index.php/Summer_2011_Tutorial_Contest Back to tutorial contest]==