View source for BIRN Booth SFN 2005

'''Move-in Times'''

* Wednesday Nov 9: 12:00 pm - 4:30 pm
* Thursday Nov 10: 8:00 am - 4:30 pm
* Friday Nov 11: 8:00 am - 6:00 pm

<br />'''BIRN Booth exhibit times'''

{| border="1" cellpadding="2"
|+
|-
!
! Sun-Nov 13
! Mon-Nov 14
! Tue-Nov 15
! Wed-Nov 16
|-
! 7:00-9:30 am
| Daily Setup
| Daily Setup
| Daily Setup
| Daily Setup
|-
! 9:30-11:30 am
| BIRN-CC
| BIRN-CC
| BIRN-CC
| Test Bed: Function
|-
! 11:30-1:30 pm
| Test Bed: Mouse
| Test Bed: Function
| Test Bed: Morphometry
| Test Bed: Mouse
|-
! 1:30-3:30 pm
| Test Bed: Function
| Test Bed: Morphometry
| Test Bed: Mouse
| Test Bed: Morphometry
|-
! 3:30-5:00 pm
| Test Bed: Morphometry
| Test Bed: Mouse
| Test Bed: Function
| BIRN-CC
|}

<br />'''Demonstration Targets for each testbed'''

* '''Morph BIRN'''
** Morphometry BIRN presentation
*** [[Media:Mbirn_scientific_and_tools.ppt|Morphometry BIRN: Science & Tool Dissemination]]
*** [[Media:Mbirn_Calibration-update-AHM2005v2.ppt| Morphometry BIRN: MR Calibration]]
*** [[Media:Mbirn_AVI-update-2005-10-17.ppt| Morphometry BIRN: Analysis, Visualization and Interpretation]]
** Public data we'd like to offer through the BIRN Portal:
*** [[Mbirn:_Data_Dissemination|Mbirn: Data Dissemination]]
** Software tools we'd like to offer through the BIRN Portal:
*** [[Mbirn:_Software_Tools_Dissemination|Mbirn: Software Tools Dissemination]]

 <nowiki>**** Morph BIRN booth support ****
  Sunday 3:30-5pm: Dan Marcus, Tim Olsen, Jorge Jovicich, Anthony Kolasny
  Monday 1:30-3:30pm:  Christine Fennema-Notestine, Jorge Jovicich
  Tuesday 11:30am-1:30pm: Anthony Kolasny, Jorge Jovicich
  Wednesday 1:30-3:30pm:  Christine Fennema-Notestine, Jorge Jovicich
 </nowiki>

<br />

* '''Function BIRN'''
** Phase I Datasets and that interface
** HID/GUI demos
** QA phantom methods
** XML schema/usefulness
*** XML-enabled tools
** E-prime files from Phase I

<br />

* '''Mouse BIRN'''
** Tools:
*** A version of a mouse BIRN atlasing environment
*** Pipelines to process and atlas MRI data acquired at CIT or Duke
** Data collection methodology:
*** MRI
*** Histology
*** Nissl
*** High resolution
** Data:
*** Data from one of the mouse models of neurological disease: Exact data set TBD
*** Some Gensat data registered to mouse BIRN atlas
*** 3D Mouse Brain data set
*** 3D Paxinos MRI atlas
*** Some microarray/anatomical data
** Data Management:
*** Developmental ontology
*** Subcellular anatomy ontology
*** Genenetwork Search/get commands
** Workflows/tutorials/other documentation:
*** Tutorial of how to register Gensat data (or similar) using SmartAtlas
*** Tutorial of how to process 3D MRI volumes (from Caltech and Duke) and register them to the mouse BIRN atlas
*** Document with list of mouse BIRN publications to date

<br />

* '''BIRN CC'''

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