Difference between revisions of "Special topic breakout: Atlases"
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** Providing a mapping from structure to unique color | ** Providing a mapping from structure to unique color | ||
** Providing ability to visually represent related groups of structures (''e.g.'' structures that comprise a single structural or functional system, superstructure, or designated region) | ** Providing ability to visually represent related groups of structures (''e.g.'' structures that comprise a single structural or functional system, superstructure, or designated region) | ||
| − | ** | + | ** Incorporating existing systems of nomenclature and ontologies: (NeuroNames, FMA, BirnLex...) |
| − | ** Developing and representing structural and functional relationships | + | ** Schemes for mapping local identifiers to names/IDs in official ontologies, (and common synonyms?) |
| + | ** Developing and representing both structural and functional relationships | ||
** Developing tools to perform cross-atlas indexing | ** Developing tools to perform cross-atlas indexing | ||
| − | ** | + | ** Can/Should there eventually be a 'how-to create a slicer atlas' document? |
| − | * mapping atlases to individuals for overlaying experimental data or individual | + | * mapping atlases to individuals (for overlaying experimental data or individual image data) |
* interactive tools for displaying labels in various nomenclatures on mouseover | * interactive tools for displaying labels in various nomenclatures on mouseover | ||
| − | * tools to do both point-based and region-based indexing (useful for brain?) | + | * interactive tools to do both point-based and region-based indexing (useful for brain?) |
| − | * tools to display and navigate hierarchical relationships between structures, superstructures and substructures | + | * interactive tools to display and navigate hierarchical relationships between structures, superstructures and substructures |
* compatibility with web-based tools for making queries in anatomical context | * compatibility with web-based tools for making queries in anatomical context | ||
* other useful interactive tools? | * other useful interactive tools? | ||
... | ... | ||
Revision as of 20:22, 31 May 2007
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Atlases Breakout Session
June 26th, 3-4pm
Location: Grier Rooms A & B: 34-401A & 34-401B
Attendees:
- Gary Christensen
- Wendy Plesniak
- Brad Davis
- Florin Talos
- Michael Halle
Agenda: Discuss among the group what topics below of are interest to discuss, and prioritize.
- Define Slicer software infrastructure and conventions for atlases
- Accommodating volumetric and surface based atlases
- Providing unique identifiers per structure within any atlas
- Providing a mapping from structure to unique color
- Providing ability to visually represent related groups of structures (e.g. structures that comprise a single structural or functional system, superstructure, or designated region)
- Incorporating existing systems of nomenclature and ontologies: (NeuroNames, FMA, BirnLex...)
- Schemes for mapping local identifiers to names/IDs in official ontologies, (and common synonyms?)
- Developing and representing both structural and functional relationships
- Developing tools to perform cross-atlas indexing
- Can/Should there eventually be a 'how-to create a slicer atlas' document?
- mapping atlases to individuals (for overlaying experimental data or individual image data)
- interactive tools for displaying labels in various nomenclatures on mouseover
- interactive tools to do both point-based and region-based indexing (useful for brain?)
- interactive tools to display and navigate hierarchical relationships between structures, superstructures and substructures
- compatibility with web-based tools for making queries in anatomical context
- other useful interactive tools?
...
