Difference between revisions of "2008 Winter Project Week Tractography"
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| + | * Tractography Validation Beadeker | ||
**9:00am: Guido Gerig, Overview of Project goals and progress to date including Santa Fe meeting [http://www.na-mic.org/Wiki/index.php/Projects/Diffusion/Contrasting_Tractography_Measures tractography methods see this page for background] | **9:00am: Guido Gerig, Overview of Project goals and progress to date including Santa Fe meeting [http://www.na-mic.org/Wiki/index.php/Projects/Diffusion/Contrasting_Tractography_Measures tractography methods see this page for background] | ||
**9:15am: Randy Gollub, Morphometry BIRN DTI acquisition and analysis update | **9:15am: Randy Gollub, Morphometry BIRN DTI acquisition and analysis update | ||
**9:25am: Randy Gollub, MIND Reliability dataset goals | **9:25am: Randy Gollub, MIND Reliability dataset goals | ||
| + | * Algorithm specific presentations | ||
**9:35 Sonia Pujol (BWH) Streamline Tractography in Slicer 2.7 using ROI and Whole Brain Seeding | **9:35 Sonia Pujol (BWH) Streamline Tractography in Slicer 2.7 using ROI and Whole Brain Seeding | ||
**9:45 Sylvain Gouttard (Utah) FiberViewer | **9:45 Sylvain Gouttard (Utah) FiberViewer | ||
| Line 8: | Line 10: | ||
**10:15 Vince Magnotta (UIowa) GTract | **10:15 Vince Magnotta (UIowa) GTract | ||
**10:25 Ross Whitaker/Tom Fletcher (Utah) Volumetric Connectivity | **10:25 Ross Whitaker/Tom Fletcher (Utah) Volumetric Connectivity | ||
| − | *10:35am: | + | *10:35am: Coffee break |
**11:00 Casey Goodlett (Utah) DTI Atlas | **11:00 Casey Goodlett (Utah) DTI Atlas | ||
**11:10 Sonia Pujol (BWH) Cross algorithm summary statistics | **11:10 Sonia Pujol (BWH) Cross algorithm summary statistics | ||
| + | * Wrap up from data presentations | ||
**11:25 Ross Whitaker to kick-off discussion of Tractography results with summarizing ideas | **11:25 Ross Whitaker to kick-off discussion of Tractography results with summarizing ideas | ||
| − | *12:00pm: | + | *12:00pm: Lunch |
| − | + | *1:30- 3:00 Continue discussion of Tractography results with focus on: | |
***Data formats and coordinate system requirements/guidelines/recommendations | ***Data formats and coordinate system requirements/guidelines/recommendations | ||
***Quality control methods and implementation | ***Quality control methods and implementation | ||
Revision as of 18:13, 18 December 2007
Home < 2008 Winter Project Week Tractography- Tractography Validation Beadeker
- 9:00am: Guido Gerig, Overview of Project goals and progress to date including Santa Fe meeting tractography methods see this page for background
- 9:15am: Randy Gollub, Morphometry BIRN DTI acquisition and analysis update
- 9:25am: Randy Gollub, MIND Reliability dataset goals
- Algorithm specific presentations
- 9:35 Sonia Pujol (BWH) Streamline Tractography in Slicer 2.7 using ROI and Whole Brain Seeding
- 9:45 Sylvain Gouttard (Utah) FiberViewer
- 9:55 Tri Ngo (MIT/BWH) Stochastic Tractography
- 10:05 John Melonakos (Georgia Tech) Geodesic Tractography Segmentation
- 10:15 Vince Magnotta (UIowa) GTract
- 10:25 Ross Whitaker/Tom Fletcher (Utah) Volumetric Connectivity
- 10:35am: Coffee break
- 11:00 Casey Goodlett (Utah) DTI Atlas
- 11:10 Sonia Pujol (BWH) Cross algorithm summary statistics
- Wrap up from data presentations
- 11:25 Ross Whitaker to kick-off discussion of Tractography results with summarizing ideas
- 12:00pm: Lunch
- 1:30- 3:00 Continue discussion of Tractography results with focus on:
- Data formats and coordinate system requirements/guidelines/recommendations
- Quality control methods and implementation
- ROIs: what works, what doesn't, what to do?
- registration &/or resampling to support visit 1- visit 2 analysis and group analysis
- Freesurfer to B0 transform for white matter mask
- quantification of registration error and its propagation forward and impact on final results
- plans for data sharing curation and timeline (integration with XNAT project)
- outcome metrics and how to best frame scientific questions for this project
- 3pm: coffee break
- 3:15 Dan Marcus to lead discussion of effort required to post this dataset and results on XNAT Central or XNAT NAMIC or what?
- 4:00 Guido to lead discussion of "NAMIC software infrastructure for DWI analysis" to clarify what the community expects from a powerful NAMIC DWI Analysis toolkit and identify areas of high priority development
