Difference between revisions of "NA-MIC Internal Collaborations:New"

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  Back to [[NA-MIC_Collaborations:New|NA-MIC Collaborations]]
 
  Back to [[NA-MIC_Collaborations:New|NA-MIC Collaborations]]
 
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== [[NA-MIC_Internal_Collaborations:DiffusionImageAnalysis|Diffusion Image Analysis]] ==
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= Driving Biological Problems (2007 - 2010) =
  
== [[NA-MIC_Internal_Collaborations:StructuralImageAnalysis|Structural Image Analysis]] ==
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= [[NA-MIC_Internal_Collaborations:DiffusionImageAnalysis|Diffusion Image Analysis]] =
  
== [[NA-MIC_Internal_Collaborations:fMRIAnalysis|fMRI Analysis]] ==
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= [[NA-MIC_Internal_Collaborations:StructuralImageAnalysis|Structural Image Analysis]] =
  
=== Algorithm and Software Infrastructure ===
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= [[NA-MIC_Internal_Collaborations:fMRIAnalysis|fMRI Analysis]] =
 
 
{| cellpadding="10"
 
| style="width:15%" | [[Image:Brain-flat.PNG|200px]]
 
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== [[Projects:ConformalFlatteningRegistration|Conformal Flattening]] ==
 
 
 
The goal of this project is for better visualizing and computation of neural activity from fMRI brain imagery. Also, with this technique, shapes can be mapped to shperes for shape analysis, registration or other purposes. Our technique is based on conformal mappings which map genus-zero surface: in fmri case cortical or other surfaces, onto a sphere in an angle preserving manner. [[Projects:ConformalFlatteningRegistration|More...]]
 
 
 
<font color="red">'''New: '''</font> Y. Gao, J. Melonakos, and A. Tannenbaum. Conformal Flattening ITK Filter. ISC/NA-MIC Workshop on Open Science at MICCAI 2006.
 
 
 
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== NA-MIC Kit ==
 
== NA-MIC Kit ==

Revision as of 22:27, 22 December 2007

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Driving Biological Problems (2007 - 2010)

Diffusion Image Analysis

Structural Image Analysis

fMRI Analysis

NA-MIC Kit

NAMIC Software Process

Software Infrastructure

Training & Dissemination

Other Projects

Vxl.gif

Numerical Recipies Replacement

Our objective is to replace algorithms using the proprietary Numerical Recipes for C source base in FreeSurfer in the efforts to open-source FreeSurfer. This project has been completed through the use of the open source packages VXL (VNL) and Cephes. This includes the complete replacement of all Numerical Recipes in C code, and the implementation of a battery of unit tests for each replaced function. Currently the open source release is at a beta stage, and 25 beta releases of the source have been made. We anticipate a complete open source release in first quarter 2008. More...

New: Completed