Difference between revisions of "Slicer-IGT/GPU-IGT/112707"
From NAMIC Wiki
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# Introduction of members of this project | # Introduction of members of this project | ||
* Nicholas: student from Tokyo | * Nicholas: student from Tokyo | ||
| − | * Benjamin: student from | + | * Benjamin: student from ETHZ, be at SPL for 6 mo. till May 31, 2008. Experience in golfing simulator, histoscopy simulator, open-source game software. His project here is GPU accelerated Slicer for 4D IGT. |
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[[Image:RigidReg.jpg]] | [[Image:RigidReg.jpg]] | ||
| − | Rigid registration using affine transformation, MI similarity measure, and Powell optimization method | + | Rigid registration using affine transformation, MI similarity measure, and Powell optimization method implemented on CUDA platform. GPU-acceleration was performed on affine transformation and MI similarity measure. Performance boost of around x12 was achieved. |
| − | * Non-rigid registration (also Japanese | + | * Non-rigid registration (also Japanese CAS paper) |
[[Image:NonrigidReg.jpg]] | [[Image:NonrigidReg.jpg]] | ||
| Line 18: | Line 18: | ||
*CUDA calculator | *CUDA calculator | ||
*8800GTX, 8800GTS, Quadro FX5600, Tesla C870 is CUDA 1.0 compatible | *8800GTX, 8800GTS, Quadro FX5600, Tesla C870 is CUDA 1.0 compatible | ||
| − | *8600GTS, 8800GT is CUDA 1.1 compatible which comes with Atomic function to control | + | *8600GTS, 8800GT is CUDA 1.1 compatible which comes with Atomic function to control concurrent access to memory from multiple thread |
# Extension to ITK | # Extension to ITK | ||
* CMake turn on/off #DEFINE | * CMake turn on/off #DEFINE | ||
| − | * VTK VolumePro as part of volume | + | * VTK VolumePro as part of volume rendering |
* ITK parallelized process | * ITK parallelized process | ||
| − | * [Action items, | + | * [Action items, Nicholas] Mid-term goal for Nicholas is to port his rigid and non-rigid registration to ITK |
* [Action items, Nicholas] Contact Utah team hear how exactly they implement their ITK. | * [Action items, Nicholas] Contact Utah team hear how exactly they implement their ITK. | ||
* [Action items, Nicholas] sending volume rendering code by Dec. 6th. | * [Action items, Nicholas] sending volume rendering code by Dec. 6th. | ||
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* CUDA accelerated volume rendering | * CUDA accelerated volume rendering | ||
* x15 - 20 improvement | * x15 - 20 improvement | ||
| − | * comparison to other people's CG-based volume rendering | + | * [[media:SIGGRAPH-GPU.pdf|comparison to other people's CG-based volume rendering]] |
* [Action items, Benjamin] port CUDA-based volume rendering to vtk volume rendering classes, and then to Slicer | * [Action items, Benjamin] port CUDA-based volume rendering to vtk volume rendering classes, and then to Slicer | ||
| − | * [Action items, Benjamin] succeed Nicholas' itk-cuda-rigid non-rigid | + | * [Action items, Benjamin] succeed Nicholas' itk-cuda-rigid non-rigid registration and port them to Slicer in the context of MRg cardiac ablation |
# Timeline | # Timeline | ||
Revision as of 15:05, 19 May 2008
Home < Slicer-IGT < GPU-IGT < 112707- Introduction of members of this project
- Nicholas: student from Tokyo
- Benjamin: student from ETHZ, be at SPL for 6 mo. till May 31, 2008. Experience in golfing simulator, histoscopy simulator, open-source game software. His project here is GPU accelerated Slicer for 4D IGT.
- Nicholas update on his CUDA project
- Rigid and non-rigid registration using CUDA using Nvidia 8800 GTX (350GFlps) compatible with CUDA platform.
- Rigid registration (Japanese cas paper)
Rigid registration using affine transformation, MI similarity measure, and Powell optimization method implemented on CUDA platform. GPU-acceleration was performed on affine transformation and MI similarity measure. Performance boost of around x12 was achieved.
- Non-rigid registration (also Japanese CAS paper)
Non-rigid registration using Rueckert's B-spline algorithm. Performance boost of around x10-x20 was achieved.
- Tool kit used
- CUDA calculator
- 8800GTX, 8800GTS, Quadro FX5600, Tesla C870 is CUDA 1.0 compatible
- 8600GTS, 8800GT is CUDA 1.1 compatible which comes with Atomic function to control concurrent access to memory from multiple thread
- Extension to ITK
- CMake turn on/off #DEFINE
- VTK VolumePro as part of volume rendering
- ITK parallelized process
- [Action items, Nicholas] Mid-term goal for Nicholas is to port his rigid and non-rigid registration to ITK
- [Action items, Nicholas] Contact Utah team hear how exactly they implement their ITK.
- [Action items, Nicholas] sending volume rendering code by Dec. 6th.
- Volume rendering
- CUDA accelerated volume rendering
- x15 - 20 improvement
- comparison to other people's CG-based volume rendering
- [Action items, Benjamin] port CUDA-based volume rendering to vtk volume rendering classes, and then to Slicer
- [Action items, Benjamin] succeed Nicholas' itk-cuda-rigid non-rigid registration and port them to Slicer in the context of MRg cardiac ablation
- Timeline
- NH will write paper on IV-CUDA rendering for Journal
- Hata suggested publication of ITK-CUDA registration in Insight Journal (Feb)
- Benjamin will have short summery as of March 15 for MICCAI.
- Benjamin will finish his project by May 15th.
- Benjamin
- Communication
Bi-weekly t-con to update each other week. Next one is Dec 11, 2007 at 9am.
