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| − | Back to [[2008_Progress_Report]]
| + | This latest draft of this report has now been removed from the wiki and is available [[Media:2008_Namic_Progress_Report.doc|here]] in a MS word document for the final submission. If you have any changes to the last version of text, please send these to Tina. The final version will be posted back here by May 30th. If you really need to look at the last wiki version, please click on the history tab of this page and look at the last one edited on May 22nd. [[User:Tkapur|Tkapur]] 14:07, 23 May 2008 (EDT) |
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| − | =Guidelines for preparation=
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| − | *[[2008_Progress_Report#Scientific Report Timeline]] - Main point is that May 15 is the date by which all sections below need to be completed. No extensions are possible.
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| − | *DBPs - If there is work outside of the roadmap projects that you would like to report, you are welcome to create a separate section for it under "Other".
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| − | *The outline for this report is similar to the 2007 report, which is provided here for reference: [[2007_Annual_Scientific_Report]].
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| − | *In preparing summaries for each of the 8 topics in this report, please leverage the detailed pages for projects provided here: [[NA-MIC_Internal_Collaborations]].
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| − | *Publications will be mined from the SPL publications database. All core PIs need to ensure that all NA-MIC publications are in the publications database by May 15.
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| − | =Introduction (Tannenbaum)=
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| − | The National Alliance for Medical Imaging Computing (NA-MIC) is now in its fourth year. This Center is comprised of a multi-institutional, interdisciplinary team of computer scientists, software engineers, and medical investigators who have come together to develop and apply computational tools for the analysis and visualization of medical imaging data. A further purpose of the Center is to provide infrastructure and environmental support for the development of computational algorithms and open source technologies, and to oversee the training and dissemination of these tools to the medical research community. The first driving biological projects (DBPs) three years for Center were inspired by schizophrenia research. In the fourth year new DBPs have been added. Three are centered around diseases of the brain: (a) brain lesion analysis in neuropschiatric systemic lupus erythematosus; (b) a study of cortical thickness for autism; and (c) stochastic tractography for VCFS. In an very new direction, we have added DBP on the prostate: brachytherapy needle positioning robot integration.
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| − | =Clinical Roadmap Projects=
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| − | ==Roadmap Project: Stochastic Tractography for VCFS (Kubicki)==
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| − | ===Overview (Kubicki)===
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| − | ===Algorithm Component (Golland)===
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| − | ===Engineering Component (Davis)===
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| − | ===Clinical Component (Kubicki)===
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| − | ===Additional Information===
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| − | Additional Information for this project is available [http://wiki.na-mic.org/Wiki/index.php/DBP2:Harvard:Brain_Segmentation_Roadmap here on the NA-MIC wiki].
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| − | ==Roadmap Project: Brachytherapy Needle Positioning Robot Integration (Fichtinger)==
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| − | ===Overview (Fichtinger)===
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| − | ===Algorithm Component (Tannenbaum)===
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| − | ===Engineering Component (Hayes)===
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| − | ===Clinical Component (Fichtinger)===
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| − | ===Additional Information===
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| − | Additional Information for this project is available [http://wiki.na-mic.org/Wiki/index.php/DBP2:JHU:Roadmap here on the NA-MIC wiki].
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| − | ==Roadmap Project: Brain Lesion Analysis in Neuropsychiatric Systemic Lupus Erythematosus (Bockholt)==
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| − | ===Overview (Bockholt)===
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| − | ===Algorithm Component (Whitaker)===
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| − | ===Engineering Component (Pieper)===
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| − | ===Clinical Component (Bockholt)===
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| − | ===Additional Information===
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| − | Additional Information for this project is available [http://wiki.na-mic.org/Wiki/index.php/DBP2:MIND:Roadmap here on the NA-MIC wiki].
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| − | ==Roadmap Project: Cortical Thickness for Autism(Hazlett)==
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| − | ===Overview (Hazlett)===
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| − | ===Algorithm Component (Styner)===
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| − | ===Engineering Component (Miller, Vachet)===
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| − | ===Clinical Component (Hazlett)===
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| − | ===Additional Information===
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| − | Additional Information for this project is available [http://wiki.na-mic.org/Wiki/index.php/DBP2:UNC:Cortical_Thickness_Roadmap here on the NA-MIC wiki].
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| − | =Four Infrastructure Topics=
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| − | ==Diffusion Image Analysis (Gerig)==
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| − | ===Progress===
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| − | ===Key Investigators===
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| − | ===Additional Information===
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| − | Additional Information for this topic is available [http://wiki.na-mic.org/Wiki/index.php/NA-MIC_Internal_Collaborations:DiffusionImageAnalysis here on the NA-MIC wiki].
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| − | ==Structural Analysis(Tannenbaum)==
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| − | ===Progress===
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| − | ===Key Investigators===
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| − | MIT: Kilian Pohl, Sandy Wells, Eric Grimson
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| − | UNC: Martin Styner, Ipek Oguz, Xavier Barbero
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| − | Utah: Ross Whitaker, Guido Gerig, Suyash Awate, Tolga Tasdizen, Tom Fletcher, Joshua Cates, Miriah Meyer
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| − | GaTech: Allen Tannenbaum, John Melonakos, Tauseef ur Rehman, Shawn Lankton, Yogesh Rathi, James Malcolm
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| − | Isomics: Steve Pieper
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| − | GE: Bill Lorensen, Jim Miller
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| − | Kitware: Luis Ibanez, Karthik Krishnan,
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| − | UCLA: Michael J. Pan, Jagadeeswaran Rajendiran
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| − | BWH: Sylvain Bouix, Motoaki Nakamura, Min-Seong Koo, Martha Shenton, Marc Niethammer, Jim Levitt
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| − | Dartmouth: Andrew Saykin
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| − | ===Additional Information===
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| − | Additional Information for this topic is available [http://wiki.na-mic.org/Wiki/index.php/NA-MIC_Internal_Collaborations:StructuralImageAnalysis here on the NA-MIC wiki].
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| − | ==fMRI Analysis (Golland)==
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| − | ===Progress===
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| − | ===Key Investigators===
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| − | ===Additional Information===
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| − | Additional Information for this topic is available [http://wiki.na-mic.org/Wiki/index.php/NA-MIC_Internal_Collaborations:fMRIAnalysis here on the NA-MIC wiki].
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| − | ==NA-MIC Kit Theme (Schroeder)==
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| − | ===Progress===
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| − | ===Key Investigators===
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| − | ===Additional Information===
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| − | Additional Information for this topic is available [http://wiki.na-mic.org/Wiki/index.php/NA-MIC-Kit here on the NA-MIC wiki].
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| − | ==Other Projects==
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| − | Any Project(s) not covered by the 8 sections above
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| − | ==Highlights(Schroeder)==
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| − | ===EM Segmenter or TBD===
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| − | ===DTI progress or TBD===
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| − | ===Outreach (Gollub)===
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| − | ==Impact and Value to Biocomputing (Miller)==
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| − | ===Impact within the Center===
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| − | ===Impact within NIH Funded Research===
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| − | ===National and International Impact===
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| − | ==NA-MIC Timeline (Whitaker)==
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| − | ==Appendix A Publications (Kapur)==
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| − | These will be mined from the SPL publications database. All core PIs need to ensure that all NA-MIC publications are in the publications database by May 15.
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| − | ==Appendix B EAB Report and Response (Kapur)==
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| − | ===EAB Report===
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| − | ===Response to EAB Report===
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