Difference between revisions of "FMA (Protege) links to Slicer"
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===Key Investigators=== | ===Key Investigators=== | ||
* GE: Viswanath Avasarala, Jim Miller | * GE: Viswanath Avasarala, Jim Miller | ||
| − | * | + | * Harvard: Ion-Florin Talos |
| + | * Stanford: Michael Hall. | ||
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<h1>Approach, Plan</h1> | <h1>Approach, Plan</h1> | ||
| − | Our | + | Our plan is to integrate capabilities to browse foundational model of anatomy (FMA)'s ontology with the QueryAtlas ontology browser. <foo>. |
Our plan for the project week is to first try out <bar>,... | Our plan for the project week is to first try out <bar>,... | ||
Revision as of 19:59, 20 June 2008
Home < FMA (Protege) links to Slicer
Instructions for Use of this Template
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- Send an email to tkapur at bwh.harvard.edu if you are stuck
Key Investigators
- GE: Viswanath Avasarala, Jim Miller
- Harvard: Ion-Florin Talos
- Stanford: Michael Hall.
Objective
We are developing methods for analyzing diffusion tensor data along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison.
Approach, Plan
Our plan is to integrate capabilities to browse foundational model of anatomy (FMA)'s ontology with the QueryAtlas ontology browser. <foo>.
Our plan for the project week is to first try out <bar>,...
Progress
Software for the fiber tracking and statistical analysis along the tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part of the DTI Software Infrastructure project. The methods have been validated on a repeated scan of a healthy individual. This work has been published as a conference paper (MICCAI 2005) and a journal version (MEDIA 2006). Our recent IPMI 2007 paper includes a nonparametric regression method for analyzing data along a fiber tract.
References
- Talos I, Rubin D, Halle M, Musen M, Kikinis R. A prototype symbolic model of canonical functional neuroanatomy of the motor system. J Biomed Inform. 2008 Apr;41(2):251-263.
- C. Rosse and J.L.V. Mejino, A reference ontology for biomedical informatics: the Foundational Model of Anatomy. J. Biomed Inform. 36:478-500, 2003.
- P. Mork, J.F. Brinkley, and C. Rosse, OQAFMA querying agent for the Foundational Model of Anatomy: providing flexible and efficient access to a large semantic network. J. Biomed Inform. 36:501-517, 2003.
- Talos I, Rubin D, Halle M, Musen M, Kikinis R. A prototype symbolic model of canonical functional neuroanatomy of the motor system. J Biomed Inform. 2008 Apr;41(2):251-263.
