Difference between revisions of "NA-MIC/Projects/External Collaboration/W&M CRTC"
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1. Distributed parametric search: | 1. Distributed parametric search: | ||
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| − | + | * need help with automated validation approaches, neurosurgery datasets | |
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| − | + | * evaluate the infrastructure options: GWE/GSlicer3? web portal? TeraGrid? | |
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| + | * are there other needs for this kind of large-scale computing? | ||
2. Tetrahedral mesh generation: | 2. Tetrahedral mesh generation: | ||
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| − | + | * meshing TCON Jun 19: no volume mesh generation discussed. What is (is there?) the need for tetrahedral mesh generation from NA-MIC projects? | |
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| + | * status of unstructured grid visualization in Slicer3 | ||
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| + | * meshing as a plugin in Slicer3 | ||
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<h1>Progress</h1> | <h1>Progress</h1> | ||
| + | 1. Distributed parameter search for NRR: | ||
| + | |||
| + | * missing features in GWE: support for MPI process execution and flow (dependencies) control | ||
| + | |||
| + | * work in progress: scripts for remote submission and execution on TeraGrid (execution module integration of the front end for registration with Slicer complete earlier) | ||
| + | |||
| + | * new datasets for registration evaluation: MRT data from XNAT, tumor growth for NRR validation (Utah) | ||
| + | |||
| + | 2. (Tetrahedral) mesh generation: | ||
| + | |||
| + | * very limited open source support, limited mesh generation functionality in ITK/VTK | ||
| + | |||
| + | * identified a group of applications that require meshing, continue discussion | ||
| + | |||
| + | * Slicer3 meshing integration: vtkUnstructuredGrid support almost ready in Slicer | ||
| + | |||
| + | * learned hands-on how to add an execution module to Slicer | ||
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| + | <h1>Events</h1> | ||
| + | |||
| + | * attended ITK, Non-rigid registration, GWE, XNAT, VV-link breakout sessions | ||
</div> | </div> | ||
Latest revision as of 14:54, 27 June 2008
Home < NA-MIC < Projects < External Collaboration < W&M CRTC Return to Project Week Main Page |
Key Investigators
- Nikos Chrisochoides, CRTC (Project lead)
- Andrey Fedorov, CRTC
- Luis Ibanez, Kitware
- Jim Miller, Kitware
- Dan Marcus
- Tina Kapur
- Marcel Prastawa
Objective
The mission of the Center for Real-Time Computing is to promote innovation in time critical applications like medical image analysis for Image Guided Therapy. The application of our focus is non-rigid image registration (NRR) for image-guided neurosurgery. The objective is to improve the performance, accuracy and usability of the existing method. There are two sub-projects we plan to explore.
1. Distributed parametric search for optimum parameter setting during NRR. This project includes three components: 1) development/evaluation of tools and methods for automated registration validation; 2) collection of ground truth data sets; 3) development of the high performance computing infrastructure.
2. Tetrahedral mesh generation for intra-cranial cavity discretization used in physics-based NRR.
Approach, Plan
1. Distributed parametric search:
- need help with automated validation approaches, neurosurgery datasets
- evaluate the infrastructure options: GWE/GSlicer3? web portal? TeraGrid?
- are there other needs for this kind of large-scale computing?
2. Tetrahedral mesh generation:
- meshing TCON Jun 19: no volume mesh generation discussed. What is (is there?) the need for tetrahedral mesh generation from NA-MIC projects?
- status of unstructured grid visualization in Slicer3
- meshing as a plugin in Slicer3
Progress
1. Distributed parameter search for NRR:
- missing features in GWE: support for MPI process execution and flow (dependencies) control
- work in progress: scripts for remote submission and execution on TeraGrid (execution module integration of the front end for registration with Slicer complete earlier)
- new datasets for registration evaluation: MRT data from XNAT, tumor growth for NRR validation (Utah)
2. (Tetrahedral) mesh generation:
- very limited open source support, limited mesh generation functionality in ITK/VTK
- identified a group of applications that require meshing, continue discussion
- Slicer3 meshing integration: vtkUnstructuredGrid support almost ready in Slicer
- learned hands-on how to add an execution module to Slicer
Events
- attended ITK, Non-rigid registration, GWE, XNAT, VV-link breakout sessions
Funding
This work is supported in part by NSF grant CSI-719929 and by John Simon Guggenheim Memorial Foundation.
