Difference between revisions of "Stanford 2008 Slicer Workshop"
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==Course Syllabus== | ==Course Syllabus== | ||
| − | + | This workshop is an introduction to the Slicer3 software platform, part of the National Alliance for Medical Imaging Computing (NA-MIC) open-source toolkit. Participants will learn how to use Slicer3 for image analysis and 3D visualization, and how to integrate external programs with the open-source software. | |
| − | This workshop is an introduction to the Slicer3 software platform, part of the National Alliance for Medical Imaging Computing open-source toolkit. Participants will learn how to use | + | The workshop provides a 1/2 day end-user session geared for all levels, followed by a 1/2 day programming session geared for developers. |
| − | The workshop provides a 1/2 day end-user session, followed by a 1/2 programming session. | ||
==Course Faculty== | ==Course Faculty== | ||
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*Steve Pieper, Ph.D., Isomics Inc. | *Steve Pieper, Ph.D., Isomics Inc. | ||
*Kathryn Hayes, M.S.E., Surgical Planning Laboratory, Brigham and Women's Hospital, Harvard Medical School. | *Kathryn Hayes, M.S.E., Surgical Planning Laboratory, Brigham and Women's Hospital, Harvard Medical School. | ||
| − | |||
| − | |||
| − | |||
| − | |||
==Agenda== | ==Agenda== | ||
| − | * '''Morning Session - User and Developer - 9 am - 12 pm''' | + | * '''Morning Session - User and Developer Workshop - 9 am - 12 pm''' |
** 9:00 am - 9:15 am Preliminary session: Software and data installation trouble shooting | ** 9:00 am - 9:15 am Preliminary session: Software and data installation trouble shooting | ||
| − | ** 9:15 am - 9:45 am Overview of the | + | ** 9:15 am - 9:45 am Overview of NA-MIC (Steve Pieper) |
| − | ** 9:45 am - 10:45 am Hands-on Session 1: 3D Data Loading and Visualization | + | ** 9:45 am - 10:00 am [[media:Slicer3_Introduction_SoniaPujol_Stanford2008.ppt |Slicer3 and the NA-MIC Toolkit]] (Sonia Pujol) |
| + | ** 9:45 am - 10:45 am [[media:3DVisualization_SoniaPujol_Stanford2008.ppt |Hands-on Session 1: 3D Data Loading and Visualization ]](Sonia Pujol) | ||
** 10:45 am - 11:00 am Coffee-break | ** 10:45 am - 11:00 am Coffee-break | ||
| − | ** 11:00 am - 11:45 am Hands-on Session 2: Data Saving | + | ** 11:00 am - 11:45 am [[media:3DVisualization_SoniaPujol_Stanford2008.ppt |Hands-on Session 2: Data Saving ]](Sonia Pujol) |
| − | ** 11:45 am - 12:15 pm Discussion | + | ** 11:45 am - 12:15 pm Demos and Discussion (Daniel Rubin) |
*12:15 pm - 2:00 pm Lunch | *12:15 pm - 2:00 pm Lunch | ||
| − | * '''Afternoon Session - Developer - 2:00 pm - 5:30 pm''' | + | * '''Afternoon Session - Developer Workshop - 2:00 pm - 5:30 pm''' |
| − | ** 2:00 pm - 2:30 pm: Introduction to the Execution model in Slicer3 | + | ** 2:00 pm - 2:30 pm: [[media: ProgrammingIntoSlicer3_SoniaPujol_Stanford2008.ppt| Introduction to the Execution model in Slicer3 ]] (Sonia Pujol) |
| − | ** 2:30 pm - 4:00 pm : Integrating the NA-MIC kit with an external program (Part 1) | + | ** 2:30 pm - 4:00 pm : [[media: ProgrammingIntoSlicer3_SoniaPujol_Stanford2008.ppt| Integrating the NA-MIC kit with an external program (Part 1)]] (Sonia Pujol) |
** 4:00 pm - 4:15 pm : Coffee break | ** 4:00 pm - 4:15 pm : Coffee break | ||
| − | ** 4:15 pm - 5:15 pm : Integrating the NA-MIC kit with an external program (Part 2) | + | ** 4:15 pm - 5:15 pm : [[media: ProgrammingIntoSlicer3_SoniaPujol_Stanford2008.ppt| Integrating the NA-MIC kit with an external program (Part 2)]] (Sonia Pujol) |
** 5:15 pm - 5:30 pm : Panel Discussion and Conclusion | ** 5:15 pm - 5:30 pm : Panel Discussion and Conclusion | ||
| + | |||
| + | ==Course Logistics== | ||
| + | * Date: Wednesday September 3, 2008 | ||
| + | * Location: [http://med.stanford.edu/maps/medical_buildings.html Stanford University Medical Center]: Room M112, Alway Building. [http://med.stanford.edu/maps/to-sumc.html Driving Directions] - [[media:Visitor_Parking_&_Transit_at_Stanford_University.doc |Parking and Transit Options]] | ||
| + | * [http://transportation.stanford.edu/parking_info/VisitorParking.shtml Visitor Parking Information at Stanford] | ||
| + | * '''<span style="background-color: yellow"> Registration </span><br />''' '''To sign-up for this event, please send an e-mail with the subject line ''Stanford 2008 Workshop'' to Sonia Pujol, Ph.D. '''(spujol at bwh.harvard.edu) with the following elements | ||
| + | ** contact information: name, title, affiliation and address | ||
| + | ** category: user or developer, | ||
| + | ** laptop characteristics: OS, RAM, Processor | ||
| + | |||
| + | == Pre-Workshop Preparation == | ||
| + | <span style="background-color: yellow">Please complete the following items in advance of the workshop. </span><br /> | ||
| + | |||
| + | * If you have registered as a end-user (morning only), please complete the [http://www.na-mic.org/Wiki/index.php/Training:Stanford_User_Workshop_Prerequisite User Prerequisites] | ||
| + | * If you have registered as a programmer (morning and afternoon), please complete the [http://www.na-mic.org/Wiki/index.php/Training:Stanford_Workshop_Prerequisite Developer Prerequisites] | ||
| + | |||
| + | Please contact the [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Slicer Users mailing list] for support and questions related to the software. | ||
Latest revision as of 20:49, 4 September 2008
Home < Stanford 2008 Slicer Workshop
Course Syllabus
This workshop is an introduction to the Slicer3 software platform, part of the National Alliance for Medical Imaging Computing (NA-MIC) open-source toolkit. Participants will learn how to use Slicer3 for image analysis and 3D visualization, and how to integrate external programs with the open-source software. The workshop provides a 1/2 day end-user session geared for all levels, followed by a 1/2 day programming session geared for developers.
Course Faculty
- Sonia Pujol, Ph.D., Surgical Planning Laboratory, Brigham and Women's Hospital, Harvard Medical School.
- Steve Pieper, Ph.D., Isomics Inc.
- Kathryn Hayes, M.S.E., Surgical Planning Laboratory, Brigham and Women's Hospital, Harvard Medical School.
Agenda
- Morning Session - User and Developer Workshop - 9 am - 12 pm
- 9:00 am - 9:15 am Preliminary session: Software and data installation trouble shooting
- 9:15 am - 9:45 am Overview of NA-MIC (Steve Pieper)
- 9:45 am - 10:00 am Slicer3 and the NA-MIC Toolkit (Sonia Pujol)
- 9:45 am - 10:45 am Hands-on Session 1: 3D Data Loading and Visualization (Sonia Pujol)
- 10:45 am - 11:00 am Coffee-break
- 11:00 am - 11:45 am Hands-on Session 2: Data Saving (Sonia Pujol)
- 11:45 am - 12:15 pm Demos and Discussion (Daniel Rubin)
- 12:15 pm - 2:00 pm Lunch
- Afternoon Session - Developer Workshop - 2:00 pm - 5:30 pm
- 2:00 pm - 2:30 pm: Introduction to the Execution model in Slicer3 (Sonia Pujol)
- 2:30 pm - 4:00 pm : Integrating the NA-MIC kit with an external program (Part 1) (Sonia Pujol)
- 4:00 pm - 4:15 pm : Coffee break
- 4:15 pm - 5:15 pm : Integrating the NA-MIC kit with an external program (Part 2) (Sonia Pujol)
- 5:15 pm - 5:30 pm : Panel Discussion and Conclusion
Course Logistics
- Date: Wednesday September 3, 2008
- Location: Stanford University Medical Center: Room M112, Alway Building. Driving Directions - Parking and Transit Options
- Visitor Parking Information at Stanford
- Registration
To sign-up for this event, please send an e-mail with the subject line Stanford 2008 Workshop to Sonia Pujol, Ph.D. (spujol at bwh.harvard.edu) with the following elements- contact information: name, title, affiliation and address
- category: user or developer,
- laptop characteristics: OS, RAM, Processor
Pre-Workshop Preparation
Please complete the following items in advance of the workshop.
- If you have registered as a end-user (morning only), please complete the User Prerequisites
- If you have registered as a programmer (morning and afternoon), please complete the Developer Prerequisites
Please contact the Slicer Users mailing list for support and questions related to the software.
