Difference between revisions of "AHM 2009"

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== Attendees ==
 
== Attendees ==
  
−
Please follow http://www.sci.utah.edu/namic2009/registration.html to complete your online registration.  The organizers will periodically publish the list of registered attendees in the space below.  Attendees should '''NOT''' add their names in this section.  This list is a snapshop as of 21:29, 23 December 2008 (UTC)
+
Please follow http://www.sci.utah.edu/namic2009/registration.html to complete your online registration.  The organizers will periodically publish the list of registered attendees in the space below.  Attendees should '''NOT''' add their names in this section.  This list is a snapshop as of 20:19, 31 December 2008 (UTC)
−
 
+
# Michael Ackerman National Library of Medicine at NIH
−
# Michael Ackerman NA-MIC All Hands Meeting National Library of Medicine at NIH
+
# Luca Antiga Mario Negri Institute
−
# Luca Antiga NA-MIC All Hands Meeting and Project Week 2009 Mario Negri Institute
+
# Kevin Archie Washington University
−
# Kevin Archie NA-MIC All Hands Meeting and Project Week 2009 Washington University
+
# Nicole Aucoin BWH
−
# Nicole Aucoin NA-MIC All Hands Meeting and Project Week 2009 BWH
+
# Stephen Aylward Kitware, Inc.
−
# Stephen Aylward NA-MIC All Hands Meeting and Project Week 2009 Kitware
+
# Sebastien Barre Kitware, Inc.
−
# Sebastien Barre NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
+
# Morry Blumenfeld EAB
−
# Morry Blumenfeld NA-MIC All Hands Meeting EAB
+
# H Jeremy Bockholt The Mind Research Network
−
# H Jeremy Bockholt NA-MIC All Hands Meeting and Project Week 2009 The Mind Research Network
+
# Sylvain Bouix PNL
−
# Sylvain Bouix NA-MIC All Hands Meeting and Project Week 2009 PNL
+
# Josh Cates SCI Institute
−
# Josh Cates NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
+
# German Cavelier NIH-NIMH
−
# German Cavelier NA-MIC All Hands Meeting NIH-NIMH
+
# David Chen NLM
−
# Kiyoyuki Chinzei NA-MIC All Hands Meeting and Project Week 2009 AIST
+
# Kiyoyuki Chinzei AIST
−
# Kevin Cleary NA-MIC All Hands Meeting Georgetown University
+
# Kevin Cleary Georgetown University
−
# Manasi Datar NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
+
# Zohara Cohen NIH
−
# Michal Depa NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
+
# Manasi Datar SCI Institute
−
# Harish Doddi NA-MIC All Hands Meeting and Project Week 2009 Stanford University
+
# julien de Siebenthal BWH
−
# Andriy Fedorov NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
+
# Michal Depa MIT CSAIL
−
# Gabor Fichtinger NA-MIC All Hands Meeting Queens Univ
+
# Harish Doddi Stanford University
−
# Yi Gao NA-MIC All Hands Meeting and Project Week 2009
+
# Andriy Fedorov SPL-BWH
−
# Arnaud Gelas NA-MIC All Hands Meeting and Project Week 2009 Harvard Medical School
+
# Gabor Fichtinger Queens Univ
−
# Guido Gerig NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
+
# Yi Gao Georgia Tech
−
# Polina Golland NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
+
# Arnaud Gelas Harvard Medical School
−
# Randy L. Gollub NA-MIC All Hands Meeting and Project Week 2009 MGH
+
# Guido Gerig SCI Institute
−
# Casey Goodlett NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
+
# Polina Golland MIT CSAIL
−
# Alexandre Gouaillard NA-MIC All Hands Meeting and Project Week 2009 Harvard Medical School
+
# Randy L. Gollub MGH
−
# Sylvain Gouttard NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
+
# Casey Goodlett SCI Institute
−
# Jeffrey Grethe NA-MIC All Hands Meeting and Project Week 2009 UC San Diego
+
# Alexandre Gouaillard Harvard Medical School
−
# Nicole Grosland NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
+
# Sylvain Gouttard SCI Institute
−
# Daniel Haehn NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
+
# Jeffrey Grethe UC San Diego
−
# Nathan Hageman NA-MIC All Hands Meeting and Project Week 2009 UCLA
+
# Nicole Grosland The University of Iowa
−
# Nobuhiko Hata NA-MIC All Hands Meeting and Project Week 2009 Brigham and Womens Hospital
+
# Ozgur Guler ENT Medical University Innsbruck
−
# Kathryn Hayes NA-MIC All Hands Meeting and Project Week 2009 Brigham and Womens Hospital
+
# Daniel Haehn SPL-BWH
−
# Heather Cody Hazlett NA-MIC All Hands Meeting University of North Carolina
+
# Nathan Hageman UCLA
−
# Jaesung Hong NA-MIC All Hands Meeting and Project Week 2009 Kyushu University
+
# Nobuhiko Hata Brigham and Womens Hospital
−
# Luis Ibanez NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
+
# Kathryn Hayes Brigham and Womens Hospital
−
# Chris Johnson NA-MIC All Hands Meeting and Project Week 2009 EAB
+
# Heather Cody Hazlett University of North Carolina
−
# Ron Kikinis NA-MIC All Hands Meeting and Project Week 2009 SPL - BWH
+
# Jaesung Hong Kyushu University
−
# Ivan Kolesov NA-MIC All Hands Meeting and Project Week 2009 Georgia Tech
+
# Luis Ibanez Kitware, Inc.
−
# Karthik Krishnan NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
+
# Chris Johnson EAB
−
# Marek Kubicki NA-MIC All Hands Meeting and Project Week 2009 PNL_BWH
+
# Ron Kikinis SPL - BWH
−
# Curtis Lisle NA-MIC All Hands Meeting and Project Week 2009 KnowledgeVis, LLC
+
# Ivan Kolesov Georgia Tech
−
# Yanling Liu NA-MIC All Hands Meeting and Project Week 2009 SAIC-Frederick, Inc.
+
# Karthik Krishnan Kitware, Inc.
−
# Zhexing Liu NA-MIC All Hands Meeting and Project Week 2009 NIRAL, UNC
+
# Marek Kubicki PNL_BWH
−
# Terry Lorber NA-MIC All Hands Meeting and Project Week 2009 Isomics, Inc
+
# Curtis Lisle KnowledgeVis, LLC
−
# Bill Lorensen NA-MIC All Hands Meeting and Project Week 2009 EAB
+
# Yanling Liu SAIC-Frederick, Inc.
−
# Vincent Magnotta NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
+
# Zhexing Liu NIRAL, UNC
−
# Daniel Marcus NA-MIC All Hands Meeting and Project Week 2009 Washington University
+
# Terry Lorber Isomics, Inc
−
# Katie Mastrogiacomo NA-MIC All Hands Meeting and Project Week 2009 SPL - BWH
+
# Bill Lorensen EAB
−
# Cedric Mathieu NA-MIC All Hands Meeting and Project Week 2009 UNC
+
# Vincent Magnotta The University of Iowa
−
# Bjoern Menze NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
+
# Daniel Marcus Washington University
−
# Mikhail Milchenko NA-MIC All Hands Meeting Washington University in St Louis
+
# Katie Mastrogiacomo SPL - BWH
−
# James Miller NA-MIC All Hands Meeting and Project Week 2009
+
# Cedric Mathieu UNC
−
# Vandana Mohan NA-MIC All Hands Meeting and Project Week 2009 Georgia Inst of Technology
+
# Bjoern Menze MIT CSAIL
−
# kishore mosaliganti NA-MIC All Hands Meeting and Project Week 2009 Harvard Medical School
+
# Mikhail Milchenko Washington University in St Louis
−
# Sandy Napel NA-MIC All Hands Meeting EAB
+
# James Miller GE Global Research
−
# Marc Niethammer NA-MIC All Hands Meeting and Project Week 2009 UNC Chapel Hill
+
# Vandana Mohan Georgia Inst of Technology
−
# Guy Nir NA-MIC All Hands Meeting and Project Week 2009 Technion
+
# kishore mosaliganti Harvard Medical School
−
# Ipek Oguz NA-MIC All Hands Meeting and Project Week 2009 UNC
+
# Sandy Napel EAB
−
# Saikat Pal NA-MIC All Hands Meeting and Project Week 2009 Stanford University
+
# Marc Niethammer UNC Chapel Hill
−
# Steve Pieper NA-MIC All Hands Meeting and Project Week 2009 Isomics, Inc.
+
# Guy Nir Technion
−
# Marcel Prastawa NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
+
# Ipek Oguz UNC
−
# Fred Prior NA-MIC All Hands Meeting EAB
+
# Saikat Pal Stanford University
−
# Sonia Pujol NA-MIC All Hands Meeting and Project Week 2009 Surgical Planning Lab, Brigham  Womens Hosp
+
# Steve Pieper Isomics, Inc.
−
# Vidya Rajagopalan NA-MIC All Hands Meeting and Project Week 2009 Virginia Tech
+
# Wendy Plesniak Brigham and Womens Hospital
−
# Austin Ramme NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
+
# Marcel Prastawa SCI Institute
−
# Petter Risholm NA-MIC All Hands Meeting and Project Week 2009 Brigham Womens Hospital
+
# Fred Prior EAB
−
# James Ross NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
+
# Sonia Pujol Surgical Planning Lab, Brigham  Womens Hosp
−
# Marco Ruiz NA-MIC All Hands Meeting and Project Week 2009 UCSD
+
# Vidya Rajagopalan Virginia Tech
−
# Raul San Jose NA-MIC All Hands Meeting and Project Week 2009 LMI-BWH
+
# Austin Ramme The University of Iowa
−
# Peter Savadjiev NA-MIC All Hands Meeting and Project Week 2009 Brigham  Womens Hospital
+
# Petter Risholm Brigham Womens Hospital
−
# William Schroeder NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
+
# James Ross SPL-BWH
−
# Mark Scully NA-MIC All Hands Meeting and Project Week 2009 The Mind Research Network
+
# Marco Ruiz UCSD
−
# Madeleine Seeland NA-MIC All Hands Meeting and Project Week 2009 LMI
+
# Raul San Jose LMI-BWH
−
# Gregory Sharp NA-MIC All Hands Meeting and Project Week 2009 MGH
+
# Peter Savadjiev Brigham  Womens Hospital
−
# Dinggang Shen NA-MIC All Hands Meeting UNC-Chapel Hill
+
# William Schroeder Kitware, Inc.
−
# Kiran Shivanna NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
+
# Mark Scully The Mind Research Network
−
# Shantanu Singh NA-MIC All Hands Meeting and Project Week 2009 The Ohio State University
+
# Madeleine Seeland LMI
−
# Martin Styner NA-MIC All Hands Meeting and Project Week 2009 University of North Carolina
+
# Gregory Sharp MGH
−
# Allen Tannenbaum NA-MIC All Hands Meeting and Project Week 2009 Georgia Tech
+
# Dinggang Shen UNC-Chapel Hill
−
# Xiaodong Tao NA-MIC All Hands Meeting and Project Week 2009 GE Global Research
+
# Kiran Shivanna The University of Iowa
−
# Doug Terry NA-MIC All Hands Meeting and Project Week 2009 Psychiatry Neuroimaging Lab
+
# Shantanu Singh The Ohio State University
−
# Clement Vachet NA-MIC All Hands Meeting and Project Week 2009 UNC
+
# Martin Styner University of North Carolina
−
# Koen Van Leemput NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
+
# Allen Tannenbaum Georgia Tech
−
# Archana Venkataraman NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
+
# Xiaodong Tao GE Global Research
−
# Siddharth Vikal NA-MIC All Hands Meeting and Project Week 2009 Queens University
+
# Doug Terry Psychiatry Neuroimaging Lab
−
# William Wells NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
+
# Clement Vachet UNC
−
# Carl-Fredrik Westin NA-MIC All Hands Meeting and Project Week 2009 Brigham and Womens Hospital
+
# Koen Van Leemput MIT CSAIL
−
# Ross Whitaker NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
+
# Archana Venkataraman MIT CSAIL
−
# Nathan Wilson NA-MIC All Hands Meeting Cardiovascular Simulation, Inc.
+
# Siddharth Vikal Queens University
−
# Chris Wyatt NA-MIC All Hands Meeting
+
# Xiaogang Wang Massachusetts Institute of Technology
−
# Alexander Yarmarkovich NA-MIC All Hands Meeting and Project Week 2009 ISOMIC
+
# William Wells SPL-BWH
−
# Dr. Terry S Yoo NA-MIC All Hands Meeting DHHSNIHNLM
+
# Carl-Fredrik Westin Brigham and Womens Hospital
 +
# Ross Whitaker SCI Institute
 +
# Nathan Wilson Cardiovascular Simulation, Inc.
 +
# Chris Wyatt Virginia Tech
 +
# Alexander Yarmarkovich Isomics, Inc
 +
# Dr. Terry S Yoo DHHSNIHNLM

Revision as of 20:19, 31 December 2008

Home < AHM 2009

Introduction

This is the home page for the 2009 NA-MIC all hands meeting (AHM). NA-MIC participants meet for a AHM once a year. The purpose of the AHM is to coordinate, discuss plans and report to NIH officers and the external advisory board (EAB). The external advisory board meets with the NA-MIC leadership immediately after the AHM. In parallel, NA-MIC is organizing a project week. These events, with the exception of the EAB meeting, are open to collaborators and potential collaborators.

For more information about the project weeks in general, click here.

For information about the January 2009 project week, see below or click here.

For information about Utah as a travel destination click here.

View of the City
SLC The 2009 AHM, EAB and Project Week will be held in Salt Lake City, UT, January 5-9 2009.

Agenda

(preliminary)

Time Monday, January 5 Tuesday, January 6 Wednesday, January 7 Thursday, January 8 Friday, January 9
Project Activities in Capitol B-C Project Activities in Capitol B-C Project Activities in Capitol B-C AHM in Capitol A-B, EAB in Olympus B

Project Activities in Olympus A

Project Activities in Capitol B-C
7:30-8:00 Breakfast Breakfast Breakfast Breakfast
8:00-10:00 9:30 Core 1 and 2 PI closed session in Capitol A Project Work
8:00-9:00 How to use NITRC and slicer(Steve, Terry)

9:00-10:00 Using Batchmake and XNAT to process large studies (Julien Jomier and Dan Marcus) in Amethyst 1

Project Work
8:00-9:00 Tutorial Review and Judging Amethyst 1 		8:00 Introduction, Ron Kikinis

8:05 NA-MIC Highlights (Ross Whitaker)
Roadmap Projects
8:35: JHU/Queens (Gabor Fichtinger)
8:55: UNC (Heather Cody)
9:15: PNL (Marek Kubicki)
9.35: Mind Institute (Jeremy Bockolt)

 Project Work
TBD
10:00-10:30 Core 1 and 2 PI closed session Coffee Coffee Coffee Coffee
10:30-12:00 Core 1 and 2 PI closed session Project Work Project Work

TBD

Collaborations
10:30: Iowa collaboration (Nicole Grosland)
10:45: Wake Forest collaboration (Chris Wyatt)
11:00: Georgetown U. collaboration (Kevin Cleary)
11:15: UNC collaboration (Dinggang Shen)
11:30: Mario Negri Collaboration (Luca Antiga)
11:45: Discussion

 Project Work
12:00-1:00 Lunch Lunch
Lunch
 Lunch Adjourn
1:00-3:00 Begin Project Activities: Introduce Projects and Participants DTI Discussion (Sonia, Randy, Others) Amethyst 1 Project Work
Python Modules (Luca Antiga)

Tools and Tutorials (coordinator)
1:00-1:20 Slicer (Steve Pieper)
1:20-1:40 Plug-ins for Slicer (Jim Miller)
1:40-2:00 Non-interactive tools (Stephen Aylward)
2:00-3:00 Tutorial Contest: Presentations by the winners (Randy Gollub)
3:00-3:30 Coffee Coffee Coffee Coffee
3:00-5:00 3:30-4:30 GUI Testing and Developing Test Modules for Slicer (Sebastien) Amethyst 1 3:30-4:30 Cell Segmentation (Alex G)
Project Work
TBD Amethyst 1 		Project Work
3:00-5:00 Meshing Tutorial (Nicole Grosland, Vincent Magnotta)
Iowa_Meshing_Tutorial
Amethyst 1 		EAB
Olympus B
3:00-4:00 Discussion with NA-MIC Leadership
4:00-5:00 Closed Session
05:00-07:00 05:00-06:00 Meshing Breakout 6:00 Optional: Beer at Murphy's (like last year)

Please note that there will be a Core 1&2 Site PI Retreat on the morning of Monday, January 5th. This is a closed session for Core 1&2 Site PIs, with no delegates. The topic is the competitive renewal.

Dates. Venue. Registration

Dates:

  • The All Hands Meeting and External Advisory Board Meeting will be held on Thursday, January 8th.
  • Project Activities will be held rest of the week between Monday, January 5th and Friday, January 9th.

Venue: The venue for the meeting is Marriot City Center, Salt Lake City, Utah Mariott City Center, Salt Lake City, Utah. (Floorplan). Please either call the hotel at 1-801-961-8700 or 1-866-961-8700 (toll free) or book online by December 4, 2008 using the code SCISCIA to get rooms at $139/night. Please note that we do need attendees to use this hotel in order to not incur additional charges for the use of conference rooms.

Registration: We are charging a registration fee to all participants ($200 for AHM only, and $450 for AHM+). The fee covers the costs of the facilities and food provided. In order to keep the fee low, we need to get a sufficient number of hotel nights by our participants. See above for more on this. Please click http://www.sci.utah.edu/namic2009/registration.html for online registration. This registration must be completed by December 12, 2008.

Connectivity We have three wireless access points at the AHM. Two of them are located in the capital ballroom. One is named capital-ballroom, the other is named capital-ballroom2. If one access point doesn't let you connect it is probably overloaded. In that case, please try connecting to the other one.

Attendees

Please follow http://www.sci.utah.edu/namic2009/registration.html to complete your online registration. The organizers will periodically publish the list of registered attendees in the space below. Attendees should NOT add their names in this section. This list is a snapshop as of 20:19, 31 December 2008 (UTC)

  1. Michael Ackerman National Library of Medicine at NIH
  2. Luca Antiga Mario Negri Institute
  3. Kevin Archie Washington University
  4. Nicole Aucoin BWH
  5. Stephen Aylward Kitware, Inc.
  6. Sebastien Barre Kitware, Inc.
  7. Morry Blumenfeld EAB
  8. H Jeremy Bockholt The Mind Research Network
  9. Sylvain Bouix PNL
  10. Josh Cates SCI Institute
  11. German Cavelier NIH-NIMH
  12. David Chen NLM
  13. Kiyoyuki Chinzei AIST
  14. Kevin Cleary Georgetown University
  15. Zohara Cohen NIH
  16. Manasi Datar SCI Institute
  17. julien de Siebenthal BWH
  18. Michal Depa MIT CSAIL
  19. Harish Doddi Stanford University
  20. Andriy Fedorov SPL-BWH
  21. Gabor Fichtinger Queens Univ
  22. Yi Gao Georgia Tech
  23. Arnaud Gelas Harvard Medical School
  24. Guido Gerig SCI Institute
  25. Polina Golland MIT CSAIL
  26. Randy L. Gollub MGH
  27. Casey Goodlett SCI Institute
  28. Alexandre Gouaillard Harvard Medical School
  29. Sylvain Gouttard SCI Institute
  30. Jeffrey Grethe UC San Diego
  31. Nicole Grosland The University of Iowa
  32. Ozgur Guler ENT Medical University Innsbruck
  33. Daniel Haehn SPL-BWH
  34. Nathan Hageman UCLA
  35. Nobuhiko Hata Brigham and Womens Hospital
  36. Kathryn Hayes Brigham and Womens Hospital
  37. Heather Cody Hazlett University of North Carolina
  38. Jaesung Hong Kyushu University
  39. Luis Ibanez Kitware, Inc.
  40. Chris Johnson EAB
  41. Ron Kikinis SPL - BWH
  42. Ivan Kolesov Georgia Tech
  43. Karthik Krishnan Kitware, Inc.
  44. Marek Kubicki PNL_BWH
  45. Curtis Lisle KnowledgeVis, LLC
  46. Yanling Liu SAIC-Frederick, Inc.
  47. Zhexing Liu NIRAL, UNC
  48. Terry Lorber Isomics, Inc
  49. Bill Lorensen EAB
  50. Vincent Magnotta The University of Iowa
  51. Daniel Marcus Washington University
  52. Katie Mastrogiacomo SPL - BWH
  53. Cedric Mathieu UNC
  54. Bjoern Menze MIT CSAIL
  55. Mikhail Milchenko Washington University in St Louis
  56. James Miller GE Global Research
  57. Vandana Mohan Georgia Inst of Technology
  58. kishore mosaliganti Harvard Medical School
  59. Sandy Napel EAB
  60. Marc Niethammer UNC Chapel Hill
  61. Guy Nir Technion
  62. Ipek Oguz UNC
  63. Saikat Pal Stanford University
  64. Steve Pieper Isomics, Inc.
  65. Wendy Plesniak Brigham and Womens Hospital
  66. Marcel Prastawa SCI Institute
  67. Fred Prior EAB
  68. Sonia Pujol Surgical Planning Lab, Brigham Womens Hosp
  69. Vidya Rajagopalan Virginia Tech
  70. Austin Ramme The University of Iowa
  71. Petter Risholm Brigham Womens Hospital
  72. James Ross SPL-BWH
  73. Marco Ruiz UCSD
  74. Raul San Jose LMI-BWH
  75. Peter Savadjiev Brigham Womens Hospital
  76. William Schroeder Kitware, Inc.
  77. Mark Scully The Mind Research Network
  78. Madeleine Seeland LMI
  79. Gregory Sharp MGH
  80. Dinggang Shen UNC-Chapel Hill
  81. Kiran Shivanna The University of Iowa
  82. Shantanu Singh The Ohio State University
  83. Martin Styner University of North Carolina
  84. Allen Tannenbaum Georgia Tech
  85. Xiaodong Tao GE Global Research
  86. Doug Terry Psychiatry Neuroimaging Lab
  87. Clement Vachet UNC
  88. Koen Van Leemput MIT CSAIL
  89. Archana Venkataraman MIT CSAIL
  90. Siddharth Vikal Queens University
  91. Xiaogang Wang Massachusetts Institute of Technology
  92. William Wells SPL-BWH
  93. Carl-Fredrik Westin Brigham and Womens Hospital
  94. Ross Whitaker SCI Institute
  95. Nathan Wilson Cardiovascular Simulation, Inc.
  96. Chris Wyatt Virginia Tech
  97. Alexander Yarmarkovich Isomics, Inc
  98. Dr. Terry S Yoo DHHSNIHNLM
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