Difference between revisions of "IGT:ToolKit/Prostate-Planning"

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Back to [[IGT:ToolKit|IGT:ToolKit]]
 
Back to [[IGT:ToolKit|IGT:ToolKit]]
  
=Neurosurgical Planning for Image Guided Therapy using Slicer3=
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=Prostate Therapy Planning Tutorial=
  
 
==Overview==
 
==Overview==
  
This tutorial reviews Slicer3's Image Guided Therapy capabilities using the example of preoperative planning for neurosurgeryIt covers how to perform multiple tasks in Slicer3, including:
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This tutorial gives an example of using Slicer3 for MRI-guided prostate interventionsTopics covered include:
* Image registration
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* Clinical background on MRI-guided prostate interventions
* Segmentation and model making
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* Non-rigid image registration using B-splines
* Diffusion Tensor Imaging and tractography
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* Manual segmentation
* Using an atlas
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* Creation of 3D surface models
  
 
==Tutorial Materials==
 
==Tutorial Materials==
* Tutorial slides for the neurosurgical planning tutorial:  [[Media:ImageGuidedTherapyPlanning.pdf | pdf]] (recommended) or [[Media:ImageGuidedTherapyPlanning.ppt | ppt]]
 
* [[Media:NeurosurgicalPlanningTutorialData.zip | Neurosurgical planning tutorial dataset]] - contains:
 
** Patient dataset
 
** SPL-PNL brain atlas
 
** MRML scene registering the patient with the atlas
 
** MRML scene registering the patient's anatomical MRI with the patient's DTI
 
** MRML scene registering of precomputed tensor data for the patient's DTI
 
  
==Bonus Materials==
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* Tutorial slides for the MRI-guided prostate interventions tutorial:  [[Media:MRGuidedProstateInterventions.pdf| pdf]] (recommended) or [[Media:MRGuidedProstateInterventions.ppt | ppt]]
This is a subset of the data above, which demonstrates some of the capabilities of the tractography package in Slicer 3.3. Snapshots 1-4 demonstrate a progression of the analysis of the interrelation of the morphology and DTI.
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* [[Media:MRGuidedProstateInterventions.zip| MRI-guided prostate interventions tutorial dataset]] - contains:
#general view
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** For non-rigid image registration:  pre-operative high-quality MRI image and intra-operative MRI image
#location of the precentral gyrus based the surface of the white matter
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** For manual segmentation and model making:  T1 and T2 MRI images and sample label map
#peritumoral seeding of tractography: The general appearance is that of a "ball of spaghettis" with two tentacles,
 
#exploration of the "tentacles": fiducial based seeding in the cerebral peduncle and in the vicinity of Brocca's area reveal potential corticospinal tract and acuate fasciculus
 
*[[media:NeurosurgDTIdemo2008.zip|Original MRML scene and data in a zip file]]
 
  
 
==Software Installation Instructions==
 
==Software Installation Instructions==
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==People==
 
==People==
 
* [http://www.spl.harvard.edu/~dpace Danielle Pace]
 
* [http://www.spl.harvard.edu/~dpace Danielle Pace]
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* [http://www.spl.harvard.edu/~sota Sota Oguro]
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* [http://www.spl.harvard.edu/~haker Steve Haker]
 
* [http://www.spl.harvard.edu/~noby Nobuhiko Hata]
 
* [http://www.spl.harvard.edu/~noby Nobuhiko Hata]
 
 
 
 
[[Media:MRGuidedProstateInterventions.ppt |
 
Final version for London training event]]
 
 
Dataset for London training event:  [[Media:MRGuidedProstateInterventions.zip | MRGuidedProstateInterventions.zip]]
 

Latest revision as of 06:11, 5 January 2009

Home < IGT:ToolKit < Prostate-Planning
ProstatePlanningOverview.jpg

Back to IGT:ToolKit

Prostate Therapy Planning Tutorial

Overview

This tutorial gives an example of using Slicer3 for MRI-guided prostate interventions. Topics covered include:

  • Clinical background on MRI-guided prostate interventions
  • Non-rigid image registration using B-splines
  • Manual segmentation
  • Creation of 3D surface models

Tutorial Materials

  • Tutorial slides for the MRI-guided prostate interventions tutorial: pdf (recommended) or ppt
  • MRI-guided prostate interventions tutorial dataset - contains:
    • For non-rigid image registration: pre-operative high-quality MRI image and intra-operative MRI image
    • For manual segmentation and model making: T1 and T2 MRI images and sample label map

Software Installation Instructions

Go to the Slicer3 Install site.

People