Difference between revisions of "NA"

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'''Objective:''' Dart2 and CTest are core elements (server and client, respectively) of NA-MIC's quality control system for software development. Here, we are extending NA-MIC's software testing and quality process to support advanced reporting and integration with software testing tools while simplifying the use and installation of NA-MIC's software quality tools.
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'''Objective:''' We want to add various statistical measures into our PDE flows for medical imaging. This will allow the incorporation of global image information into the locally defined PDE frameowrk.
  
'''Progress:'''
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'''Progress:''' We developped flows which can separate the distributions inside and outside the evolving contour, and we have also been including shape information in the flows.
  
Dart2 versions 0.4, 0.5, 0.6, 0.8.5, and 1.0-rc1 (?) were made available to NA-MIC and the community at large.
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'''Completed:'''
  
CTest was updated to support features of Dart2 including XML-RPC submission, partial submision of results, hierarchical test submission. Several features were added to simplify testing of complex tools such as Slicer. CTest scripting was improved to provide flexible testing scenarios.
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* A statistically based flow for image segmentation, using Fast Marching
  
Dart2 features:
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<div class="thumb tright"><div style="width: 182px">[[Image:Gatech_SlicerModel2.jpg|[[Image:180px-Gatech_SlicerModel2.jpg|Figure 1:Screenshot from the Slicer Fast Marching module]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_SlicerModel2.jpg|[[Image:magnify-clip.png|Enlarge]]]]</div>Figure 1:Screenshot from the Slicer Fast Marching module</div></div></div>
  
* Single jar file with embedded servlet container, embedded database, xmlrpc connection, task management, events...
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''Code''
* Documentation (90 page user/administration [http://svn.na-mic.org:8000/svn/Dart/trunk/Dart.pdf guide])
 
* Hierarchical tests
 
* Archival and aging of test results and submissions
 
* Sortable tables
 
* Plots of measurements over time
 
* Email notifications
 
* RSS feeds on recent submissions
 
* Notes, coverage, dynamic analysis, style
 
* Users/Roles
 
* Events, tasks, messengers
 
* Apache proxy configuration
 
  
'''Key Investigators:'''
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* The code has been integrated into the Slicer
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* A user-oriented tutorial for the Fast Marching algorithm is available at:[http://www.bme.gatech.edu/groups/minerva/publications/papers/pichon.slicer.fastMarching/index.html Slicer Module Tutorial]
  
* GE Research: Daniel Blezek, James Miller
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''References:''
* Kitware: Andy Cedilnik
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* Eric Pichon, Allen Tannenbaum, and Ron Kikinis. A statistically based surface evolution method for medical image segmentation: presentation and validation. In International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 2, pages 711-720, 2003. Note: Best student presentation in image segmentation award[http://www.bme.gatech.edu/groups/minerva/publications/papers/pichon-media2004-segmentation.pdf [1]]
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'''Key Investigators:''' Delphine Nain, Eric Pichon, Oleg Michailovich, Yogesh Rathi, James Malcolm, Allen Tannenbaum
  
 
'''Links:'''
 
'''Links:'''
  
* Dart2
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* [[Algorithm:GATech#The_Fast_Marching_algorithm_has_been_integrated_into_the_Slicer.:GATech|GATech Tech Summary Page]]
** [[Dart2Summary|Dart2 Wiki Home Page]]
 
** [http://svn.na-mic.org:8000/svn/Dart/trunk/Dart.pdf Dart2 documentation]
 
* Dart Classic
 
** http://public.kitware.com/Dart
 
** http://www.na-mic.org/Wiki/index.php/DartSummary
 
* CMake
 
** http://www.cmake.org
 
** http://www.cmake.org/Wiki/CMake
 

Revision as of 13:28, 18 December 2006

Home < NA

Objective: We want to add various statistical measures into our PDE flows for medical imaging. This will allow the incorporation of global image information into the locally defined PDE frameowrk.

Progress: We developped flows which can separate the distributions inside and outside the evolving contour, and we have also been including shape information in the flows.

Completed:

  • A statistically based flow for image segmentation, using Fast Marching
Figure 1:Screenshot from the Slicer Fast Marching module
Enlarge
Figure 1:Screenshot from the Slicer Fast Marching module

Code

  • The code has been integrated into the Slicer
  • A user-oriented tutorial for the Fast Marching algorithm is available at:Slicer Module Tutorial

References:

  • Eric Pichon, Allen Tannenbaum, and Ron Kikinis. A statistically based surface evolution method for medical image segmentation: presentation and validation. In International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 2, pages 711-720, 2003. Note: Best student presentation in image segmentation award[1]

Key Investigators: Delphine Nain, Eric Pichon, Oleg Michailovich, Yogesh Rathi, James Malcolm, Allen Tannenbaum

Links: