Difference between revisions of "Measuring Alcohol Stress Interaction"
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* [http://svn.na-mic.org/NAMICSandBox/trunk/MRIBiasCorrectionFilter/ MRIBiasCorrectionFilter] module by Nicolas Rannou available in NAMIC SandBox, initial testing on rhesus data done | * [http://svn.na-mic.org/NAMICSandBox/trunk/MRIBiasCorrectionFilter/ MRIBiasCorrectionFilter] module by Nicolas Rannou available in NAMIC SandBox, initial testing on rhesus data done | ||
* GWE set up on SPL Cluster for registration parameter exploration | * GWE set up on SPL Cluster for registration parameter exploration | ||
| − | + | * ChangerTracker used to detect change between hippocampus of State0 and State1 of first vervet subject. | |
| + | * MRIBiasCorrection Module parameter exploration being set up in GWE of SPL cluster. | ||
| + | <h3>In Progress</h3> | ||
| + | * Working with Xioadong to adapt SkullStripper Module for Vervet Images | ||
</div> | </div> | ||
</div> | </div> | ||
Revision as of 02:53, 26 June 2009
Home < Measuring Alcohol Stress Interaction
Segmentation of Vervet Subcortical Structures
Key Investigators
- VT: Chris Wyatt, Vidya Rajagopalan
- BWH: Andrey Fedorov, Ron Kikinis, Nicolas Rannou, Sylvain Jaume
Objective
- To improve cortical segmentation of Vervet segmentation Results
- Use Change tracker module in Slicer to study hippocampal changes between subjects at two time points
Approach, Plan
- Improve rigid registration results by optimizing parameters
- Add bias correction to workflow to improve segmentation results
- Study hippocampal changes between subjects at two time points using Change Tracker
Progress
- ChangeTracker augmented with the capability to accept externally-defined segmentation (ChangeTrackerVT in NAMIC Sandbox)
- MRIBiasCorrectionFilter module by Nicolas Rannou available in NAMIC SandBox, initial testing on rhesus data done
- GWE set up on SPL Cluster for registration parameter exploration
- ChangerTracker used to detect change between hippocampus of State0 and State1 of first vervet subject.
- MRIBiasCorrection Module parameter exploration being set up in GWE of SPL cluster.
In Progress
- Working with Xioadong to adapt SkullStripper Module for Vervet Images
References
- NA-MIC NCBC Collaboration: Measuring alcohol and stress interaction
- EM Segment project by Sylvain Jaume and Nicolas Rannou
- Tustison N., Gee J. "N4ITK: Nick's N3 ITK Implementation For MRI Bias Field Correction" InsightJournal, 2009 January - June, [1]
