Difference between revisions of "Proposed work pipeline"
From NAMIC Wiki
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# Ginger: produce ICC mask for chosen template: Gucci | # Ginger: produce ICC mask for chosen template: Gucci | ||
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# Andriy: use BRAINSfit to align all other sbjects to template through Affine + BSpline | # Andriy: use BRAINSfit to align all other sbjects to template through Affine + BSpline | ||
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# Ginger: compute average of the aligned subjects and manual separate to GM, WM + CSF | # Ginger: compute average of the aligned subjects and manual separate to GM, WM + CSF | ||
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# Ron: manually segment sub-cortical structures. | # Ron: manually segment sub-cortical structures. | ||
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# Ginger: produce Slicer3 module for back propagation and manual correct the results | # Ginger: produce Slicer3 module for back propagation and manual correct the results | ||
Revision as of 14:30, 12 October 2009
Home < Proposed work pipeline- Ginger: produce ICC mask for chosen template: Gucci
- Andriy: use BRAINSfit to align all other sbjects to template through Affine + BSpline
- Ginger: compute average of the aligned subjects and manual separate to GM, WM + CSF
- Ron: manually segment sub-cortical structures.
- Ginger: produce Slicer3 module for back propagation and manual correct the results
- Ginger: smooth back propagation results to generate final templates
- Andriy: register atlas to each subjects and apply resulting transformation to align atlas to each subjects
- Ginger: finalize by EM segmentation.
Meanwhile: Ginger will perform EM segmentation on Gucci to separate into WM, GM, CSF and Ron helps to segment sub-cortical structures.
