Difference between revisions of "Smoothing multi-label brain segmentations"
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# input: a multi-label map to be smoothed. With structures: | # input: a multi-label map to be smoothed. With structures: | ||
− | + | * WM label 3 | |
− | + | * CSF label 1 | |
− | + | * GM(without the following specified sub-cortical structures) label 2, | |
− | + | * GM sub-cortical structures | |
− | + | ** RCaudate label 13 | |
− | + | ** LCaudate label 14 | |
** RPutamen label 15 | ** RPutamen label 15 | ||
** LPutamen label 16 | ** LPutamen label 16 |
Revision as of 22:33, 27 January 2010
Home < Smoothing multi-label brain segmentationssmoothing workflow
- input: a multi-label map to be smoothed. With structures:
- WM label 3
- CSF label 1
- GM(without the following specified sub-cortical structures) label 2,
- GM sub-cortical structures
- RCaudate label 13
- LCaudate label 14
** RPutamen label 15 ** LPutamen label 16 ** RCaudate label 17 ** RCaudate label 18 ** RCaudate label 11 ** RCaudate label 12 ** RCaudate label 19 ** RCaudate label 20
- Segmentation using one of the approaches below
- Up to Affine registration of the subject to bias-corrected, skull-stripped Baseline scan
- Map the Baseline ICC mask to the State 1 space
- Skull stripping State 1 scan
- Bias-correction of State 1 scan
- Repeat up to affine registration of skull-stripped, bias-corrected State 1 scan to Baseline