Difference between revisions of "CCA:AtlasTools:LabelPage:Sample"

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== Sample LabelTag Page ==
+
__NOTOC__
 +
[[Category:LabelPage]]
 +
[[Category:LabelPageSlicerColorFile]]
 +
== Title ==
 +
'''NAC CCA Core 2010 MRI Brain Atlas'''
 +
== Description ==
 +
This file contains the label information that corresponds to the 2010 SPL Brain Atlas.
 +
== Credits ==
 +
; Author
 +
: Ion-Florin Talos MD
 +
: Michael Halle PhD
  
−
{| class="wikitable sortable labeltagging" border="1"
+
; Institution
−
|+ SPL Brain Atlas 2010 ColorFile
+
: Center for Computational Anatomy Core
 +
: Neuroimage Analysis Center
 +
: Surgical Planning Lab
 +
: Brigham and Women's Hospital
 +
 
 +
; Grants
 +
: National Institutes of Health (NIH)'s National Center for Research Resources (NCRR),  NIH P41 RR13218.
 +
 
 +
; Creation Date
 +
: 02/16/2009
 +
 
 +
==  Imports ==
 +
Links to other labeltag pages go here.  The contents of those pages are imported before the data described on this page.
 +
 
 +
* [[CCA:AtlasTools:LabelPage:SampleExternal | external sample lut]]
 +
* [[CCA:AtlasTools:LabelPage:SampleExternal2 | external sample lut (2)]]
 +
 
 +
== Lookup table information ==
 +
 
 +
These tables are just mediawiki tables with a couple of css classes included to make them sortable and declare them as Label Pages.
 +
 
 +
Generally, the workflow for Label Pages is to import an initial (and possibly large) table using a bulk data converter (say, from a CSV file),
 +
then make small edits through the wiki.  The label tables can be broken up into smaller tables to make it easier to browse and edit them.
 +
 
 +
=== Atlas lookup table ===
 +
 
 +
{| class="wikitable sortable labelpage labelpagetable" border="1"
 +
! integer_label
 +
! text_label
 +
! color
 +
! notes
 
|-
 
|-
−
! Integer Label
+
| 2
−
! Text Label
+
| white matter of left cerebral hemisphere
−
! Color
 
−
|-
 
−
| 2  
 
−
| white matter of left cerebral hemisphere  
 
 
| rgb(245,245,245)
 
| rgb(245,245,245)
−
|-  
+
| style="background:#F5F5F5"|
−
| 4  
+
|-
−
| left lateral ventricle  
+
| 4
 +
| left lateral ventricle
 
| rgb(120,18,134)
 
| rgb(120,18,134)
−
|-  
+
| style="background:#781286"|
−
| 5  
+
|-
−
| temporal horn of left lateral ventricle  
+
| 5
 +
| temporal horn of left lateral ventricle
 
| rgb(196,58,250)
 
| rgb(196,58,250)
−
|-  
+
| style="background:#C43AFA"|
−
| 7  
+
|-
−
| white matter of cerebellum left  
+
| 7
−
| rgb(220,248,164)
+
| white matter of cerebellum left
−
|-  
+
| rgb(221,248,164)
−
| 8  
+
|
−
| left cerebellar cortex  
+
|-
 +
| 8
 +
| left cerebellar cortex
 
| rgb(230,148,34)
 
| rgb(230,148,34)
−
|-  
+
|
−
| 10  
+
|-
−
| left thalamus  
+
| 10
 +
| left thalamus
 
| rgb(0,118,14)
 
| rgb(0,118,14)
−
|-  
+
|
−
| 11  
+
|-
−
| left caudate nucleus  
+
| 11
 +
| left caudate nucleus
 
| rgb(122,186,220)
 
| rgb(122,186,220)
−
|-  
+
|
−
| 12  
+
|-
−
| left putamen  
+
| 12
 +
| left putamen
 
| rgb(236,13,176)
 
| rgb(236,13,176)
−
|-  
+
|
−
| 13  
+
|-
−
| left globus pallidus pars externa  
+
| 13
 +
| left globus pallidus pars externa
 
| rgb(12,48,255)
 
| rgb(12,48,255)
−
|-  
+
|
−
| 14  
+
|-
−
| wall of third ventricle  
+
| 14
 +
| wall of third ventricle
 
| rgb(204,182,142)
 
| rgb(204,182,142)
−
|-  
+
|
−
| 15  
+
|-
−
| fourth ventricle  
+
| 15
 +
| fourth ventricle
 
| rgb(42,204,164)
 
| rgb(42,204,164)
−
|-  
+
|
−
| 17  
+
|-
−
| left hippocampus  
+
| 17
 +
| left hippocampus
 
| rgb(220,216,20)
 
| rgb(220,216,20)
−
|-  
+
|
−
| 18  
+
|-
−
| left amygdala  
+
| 18
 +
| left amygdala
 
| rgb(103,255,255)
 
| rgb(103,255,255)
−
|-  
+
|
−
| 24  
+
|-
−
| third ventricle (1)  
+
| 24
 +
| third ventricle (1)
 
| rgb(60,60,60)
 
| rgb(60,60,60)
−
|-  
+
|
−
| 25  
+
|-
−
| left globus pallidus pars interna  
+
| 25
 +
| left globus pallidus pars interna
 
| rgb(255,165,0)
 
| rgb(255,165,0)
−
|-  
+
|
−
| 26  
+
|-
−
| left nucleus accumbens  
+
| 26
 +
| left nucleus accumbens
 
| rgb(165,0,255)
 
| rgb(165,0,255)
−
|-  
+
|
−
| 27  
+
|-
−
| left middle cerebellar peduncle  
+
| 27
 +
| left middle cerebellar peduncle
 
| rgb(0,255,127)
 
| rgb(0,255,127)
−
|-  
+
|
−
| 28  
+
|-
−
| left hypothalamus  
+
| 28
 +
| left hypothalamus
 
| rgb(165,42,42)
 
| rgb(165,42,42)
−
|-  
+
|
−
| 34  
+
|-
−
| left superior cerebellar peduncle  
+
| 34
 +
| left superior cerebellar peduncle
 
| rgb(122,135,50)
 
| rgb(122,135,50)
−
|-  
+
|
−
| 35  
+
|-
−
| pons  
+
| 35
 +
| pons
 
| rgb(51,50,135)
 
| rgb(51,50,135)
−
|-  
+
|
−
| 40  
+
|-
−
| midbrain  
+
| 40
 +
| midbrain
 
| rgb(205,62,78)
 
| rgb(205,62,78)
−
|-  
+
|
−
| 41  
+
|-
−
| white matter of right cerebral hemisphere  
+
| 41
 +
| white matter of right cerebral hemisphere
 
| rgb(0,225,0)
 
| rgb(0,225,0)
−
|-  
+
|
−
| 43  
+
|-
−
| right lateral ventricle  
+
| 43
 +
| right lateral ventricle
 
| rgb(120,18,134)
 
| rgb(120,18,134)
−
|-  
+
|
−
| 44  
+
|-
−
| temporal horn of right lateral ventricle  
+
| 44
 +
| temporal horn of right lateral ventricle
 
| rgb(196,58,250)
 
| rgb(196,58,250)
−
|-  
+
|
−
| 46  
+
|-
−
| white matter of cerebellum right  
+
| 46
 +
| white matter of cerebellum right
 
| rgb(220,248,164)
 
| rgb(220,248,164)
−
|-  
+
|
−
| 47  
+
|-
−
| right cerebellar cortex  
+
| 47
 +
| right cerebellar cortex
 
| rgb(230,148,34)
 
| rgb(230,148,34)
−
|-  
+
|
−
| 49  
+
|-
−
| right thalamus  
+
| 49
 +
| right thalamus
 
| rgb(0,118,14)
 
| rgb(0,118,14)
−
|-  
+
|
−
| 50  
+
|-
−
| right caudate nucleus  
+
| 50
 +
| right caudate nucleus
 
| rgb(122,186,220)
 
| rgb(122,186,220)
−
|-  
+
|
−
| 51  
+
|-
−
| right putamen  
+
| 51
 +
| right putamen
 
| rgb(236,13,176)
 
| rgb(236,13,176)
−
|-  
+
|
−
| 52  
+
|-
−
| right globus pallidus pars externa  
+
| 52
 +
| right globus pallidus pars externa
 
| rgb(13,48,255)
 
| rgb(13,48,255)
−
|-  
+
|
−
| 53  
+
|-
−
| right hippocampus  
+
| 53
 +
| right hippocampus
 
| rgb(220,216,20)
 
| rgb(220,216,20)
−
|-  
+
|
−
| 54  
+
|-
−
| right amygdala  
+
| 54
 +
| right amygdala
 
| rgb(103,255,255)
 
| rgb(103,255,255)
−
|-  
+
|
−
| 55  
+
|-
−
| right insula  
+
| 55
 +
| right insula
 
| rgb(80,196,98)
 
| rgb(80,196,98)
−
|-  
+
|
−
| 58  
+
|-
−
| right nucleus accumbens  
+
| 58
 +
| right nucleus accumbens
 
| rgb(255,165,0)
 
| rgb(255,165,0)
−
|-  
+
|
−
| 60  
+
|-
−
| right hypothalamus  
+
| 60
 +
| right hypothalamus
 
| rgb(165,42,42)
 
| rgb(165,42,42)
−
|-  
+
|
−
| 61  
+
|-
−
| medulla oblongata  
+
| 61
 +
| medulla oblongata
 
| rgb(135,206,235)
 
| rgb(135,206,235)
−
|-  
+
|
−
| 63  
+
|-
−
| choroid plexus of right lateral ventricle  
+
| 63
 +
| choroid plexus of right lateral ventricle
 
| rgb(0,200,221)
 
| rgb(0,200,221)
−
|-  
+
|
−
| 66  
+
|-
−
| left substantia nigra  
+
| 66
 +
| left substantia nigra
 
| rgb(122,135,50)
 
| rgb(122,135,50)
−
|-  
+
|
−
| 71  
+
|-
−
| right substantia nigra  
+
| 71
 +
| right substantia nigra
 
| rgb(122,135,50)
 
| rgb(122,135,50)
−
|-  
+
|
−
| 72  
+
|-
−
| pineal body  
+
| 72
 +
| pineal body
 
| rgb(120,190,150)
 
| rgb(120,190,150)
−
|-  
+
|
−
| 78  
+
|-
−
| left optic tract  
+
| 78
 +
| left optic tract
 
| rgb(255,148,10)
 
| rgb(255,148,10)
−
|-  
+
|
−
| 79  
+
|-
−
| left red nucleus  
+
| 79
 +
| left red nucleus
 
| rgb(255,148,10)
 
| rgb(255,148,10)
−
|-  
+
|
−
| 84  
+
|-
−
| right red nucleus  
+
| 84
 +
| right red nucleus
 
| rgb(255,218,185)
 
| rgb(255,218,185)
−
|-  
+
|
−
| 85  
+
|-
−
| optic chiasm  
+
| 85
 +
| optic chiasm
 
| rgb(234,169,30)
 
| rgb(234,169,30)
−
|-  
+
|
−
| 96  
+
|-
−
| pellucid septum  
+
| 96
 +
| pellucid septum
 
| rgb(205,10,125)
 
| rgb(205,10,125)
−
|-  
+
|
−
| 100  
+
|-
−
| left mammillothalamic tract  
+
| 100
 +
| left mammillothalamic tract
 
| rgb(124,140,178)
 
| rgb(124,140,178)
−
|-  
+
|
−
| 142  
+
|-
−
| anterior commissure  
+
| 142
 +
| anterior commissure
 
| rgb(221,226,68)
 
| rgb(221,226,68)
−
|-  
+
|
−
| 200  
+
|-
−
| right mammillothalamic tract  
+
| 200
 +
| right mammillothalamic tract
 
| rgb(0,50,128)
 
| rgb(0,50,128)
−
|-  
+
|
−
| 216  
+
|-
−
| right optic tract  
+
| 216
 +
| right optic tract
 
| rgb(255,204,102)
 
| rgb(255,204,102)
−
|-  
+
|
−
| 1000  
+
|-
−
| left insula  
+
| 1000
 +
| left insula
 
| rgb(25,5,25)
 
| rgb(25,5,25)
−
|-  
+
|
−
| 1001  
+
|-
−
| left superior temporal gyrus (1)  
+
| 1001
 +
| left superior temporal gyrus (1)
 
| rgb(25,100,40)
 
| rgb(25,100,40)
−
|-  
+
|
−
| 1002  
+
|-
−
| left cingulate gyrus (1)  
+
| 1002
 +
| left cingulate gyrus (1)
 
| rgb(125,100,160)
 
| rgb(125,100,160)
−
|-  
+
|
−
| 1003  
+
|-
−
| left middle frontal gyrus (1)  
+
| 1003
 +
| left middle frontal gyrus (1)
 
| rgb(100,25,0)
 
| rgb(100,25,0)
−
|-  
+
|
−
| 1005  
+
|-
−
| left cuneus  
+
| 1005
 +
| left cuneus
 
| rgb(220,20,100)
 
| rgb(220,20,100)
−
|-  
+
|
−
| 1006  
+
|-
−
| left ambiens gyrus  
+
| 1006
 +
| left ambiens gyrus
 
| rgb(220,20,10)
 
| rgb(220,20,10)
−
|-  
+
|
−
| 1007  
+
|-
−
| left fusiform gyrus  
+
| 1007
 +
| left fusiform gyrus
 
| rgb(180,220,140)
 
| rgb(180,220,140)
−
|-  
+
|
−
| 1008  
+
|-
−
| left inferior parietal lobule  
+
| 1008
 +
| left inferior parietal lobule
 
| rgb(220,60,220)
 
| rgb(220,60,220)
−
|-  
+
|
−
| 1009  
+
|-
−
| left inferior temporal gyrus  
+
| 1009
 +
| left inferior temporal gyrus
 
| rgb(180,40,120)
 
| rgb(180,40,120)
−
|-  
+
|
−
| 1010  
+
|-
−
| left cingulate gyrus (2)  
+
| 1010
 +
| left cingulate gyrus (2)
 
| rgb(140,20,140)
 
| rgb(140,20,140)
−
|-  
+
|
−
| 1011  
+
|-
−
| left lateral occipital gyrus  
+
| 1011
 +
| left lateral occipital gyrus
 
| rgb(20,30,140)
 
| rgb(20,30,140)
−
|-  
+
|
−
| 1012  
+
|-
−
| left orbital gyri  
+
| 1012
 +
| left orbital gyri
 
| rgb(35,75,50)
 
| rgb(35,75,50)
−
|-  
+
|
−
| 1013  
+
|-
−
| left lingual gyrus  
+
| 1013
 +
| left lingual gyrus
 
| rgb(225,140,140)
 
| rgb(225,140,140)
−
|-  
+
|
−
| 1014  
+
|-
−
| left straight gyrus  
+
| 1014
 +
| left straight gyrus
 
| rgb(200,35,75)
 
| rgb(200,35,75)
−
|-  
+
|
−
| 1015  
+
|-
−
| left middle temporal gyrus  
+
| 1015
 +
| left middle temporal gyrus
 
| rgb(160,100,50)
 
| rgb(160,100,50)
−
|-  
+
|
−
| 1017  
+
|-
−
| left paracentral lobule  
+
| 1017
 +
| left paracentral lobule
 
| rgb(20,220,60)
 
| rgb(20,220,60)
−
|-  
+
|
−
| 1018  
+
|-
−
| opercular part of left inferior frontal gyrus  
+
| 1018
 +
| opercular part of left inferior frontal gyrus
 
| rgb(60,220,60)
 
| rgb(60,220,60)
−
|-  
+
|
−
| 1019  
+
|-
−
| orbital part of left inferior frontal gyrus  
+
| 1019
 +
| orbital part of left inferior frontal gyrus
 
| rgb(220,180,140)
 
| rgb(220,180,140)
−
|-  
+
|
−
| 1020  
+
|-
−
| triangular part of left inferior frontal gyrus  
+
| 1020
 +
| triangular part of left inferior frontal gyrus
 
| rgb(220,60,20)
 
| rgb(220,60,20)
−
|-  
+
|
−
| 1021  
+
|-
−
| left visual cortex  
+
| 1021
 +
| left visual cortex
 
| rgb(120,100,60)
 
| rgb(120,100,60)
−
|-  
+
|
−
| 1022  
+
|-
−
| left postcentral gyrus  
+
| 1022
 +
| left postcentral gyrus
 
| rgb(220,20,20)
 
| rgb(220,20,20)
−
|-  
+
|
−
| 1023  
+
|-
−
| left cingulate gyrus (1)  
+
| 1023
 +
| left cingulate gyrus (1)
 
| rgb(220,180,220)
 
| rgb(220,180,220)
−
|-  
+
|
−
| 1024  
+
|-
−
| left precentral gyrus  
+
| 1024
 +
| left precentral gyrus
 
| rgb(60,20,220)
 
| rgb(60,20,220)
−
|-  
+
|
−
| 1025  
+
|-
−
| left precuneus  
+
| 1025
 +
| left precuneus
 
| rgb(160,140,180)
 
| rgb(160,140,180)
−
|-  
+
|
−
| 1026  
+
|-
−
| left cingulate gyrus (3)  
+
| 1026
 +
| left cingulate gyrus (3)
 
| rgb(80,20,140)
 
| rgb(80,20,140)
−
|-  
+
|
−
| 1027  
+
|-
−
| left middle frontal gyrus (2)  
+
| 1027
 +
| left middle frontal gyrus (2)
 
| rgb(75,50,125)
 
| rgb(75,50,125)
−
|-  
+
|
−
| 1028  
+
|-
−
| left superior frontal gyrus (1)  
+
| 1028
 +
| left superior frontal gyrus (1)
 
| rgb(20,220,160)
 
| rgb(20,220,160)
−
|-  
+
|
−
| 1029  
+
|-
−
| left superior parietal lobule and precuneus  
+
| 1029
 +
| left superior parietal lobule and precuneus
 
| rgb(20,180,140)
 
| rgb(20,180,140)
−
|-  
+
|
−
| 1030  
+
|-
−
| left superior temporal gyrus  
+
| 1030
 +
| left superior temporal gyrus
 
| rgb(140,220,220)
 
| rgb(140,220,220)
−
|-  
+
|
−
| 1031  
+
|-
−
| left angular and supramarginal gyrus  
+
| 1031
 +
| left angular and supramarginal gyrus
 
| rgb(80,160,20)
 
| rgb(80,160,20)
−
|-  
+
|
−
| 1032  
+
|-
−
| left frontal pole  
+
| 1032
 +
| left frontal pole
 
| rgb(100,0,100)
 
| rgb(100,0,100)
−
|-  
+
|
−
| 1033  
+
|-
−
| left temporal pole  
+
| 1033
 +
| left temporal pole
 
| rgb(70,70,70)
 
| rgb(70,70,70)
−
|-  
+
|
−
| 1034  
+
|-
−
| left transverse temporal gyri  
+
| 1034
 +
| left transverse temporal gyri
 
| rgb(150,150,200)
 
| rgb(150,150,200)
−
|-  
+
|
−
| 2001  
+
|-
−
| right superior temporal gyrus (2)  
+
| 2001
 +
| right superior temporal gyrus (2)
 
| rgb(25,100,40)
 
| rgb(25,100,40)
−
|-  
+
|
−
| 2003  
+
|-
−
| right middle frontal gyrus (1)  
+
| 2003
 +
| right middle frontal gyrus (1)
 
| rgb(100,25,0)
 
| rgb(100,25,0)
−
|-  
+
|
−
| 2005  
+
|-
−
| right cuneus  
+
| 2005
 +
| right cuneus
 
| rgb(220,20,100)
 
| rgb(220,20,100)
−
|-  
+
|
−
| 2006  
+
|-
−
| right parahippocampal gyrus  
+
| 2006
 +
| right parahippocampal gyrus
 
| rgb(220,20,10)
 
| rgb(220,20,10)
−
|-  
+
|
−
| 2007  
+
|-
−
| right fusiform gyrus  
+
| 2007
 +
| right fusiform gyrus
 
| rgb(180,220,140)
 
| rgb(180,220,140)
−
|-  
+
|
−
| 2008  
+
|-
−
| right angular and supramarginal gyri  
+
| 2008
 +
| right angular and supramarginal gyri
 
| rgb(220,60,220)
 
| rgb(220,60,220)
−
|-  
+
|
−
| 2009  
+
|-
−
| right inferior temporal gyrus  
+
| 2009
 +
| right inferior temporal gyrus
 
| rgb(180,40,120)
 
| rgb(180,40,120)
−
|-  
+
|
−
| 2010  
+
|-
−
| right cingulate gyrus (2)  
+
| 2010
 +
| right cingulate gyrus (2)
 
| rgb(140,20,140)
 
| rgb(140,20,140)
−
|-  
+
|
−
| 2011  
+
|-
−
| right lateral occipital gyrus  
+
| 2011
 +
| right lateral occipital gyrus
 
| rgb(20,30,140)
 
| rgb(20,30,140)
−
|-  
+
|
−
| 2012  
+
|-
−
| right orbital gyri (1)  
+
| 2012
 +
| right orbital gyri (1)
 
| rgb(35,75,50)
 
| rgb(35,75,50)
−
|-  
+
|
−
| 2013  
+
|-
−
| right lingual gyrus  
+
| 2013
 +
| right lingual gyrus
 
| rgb(225,140,140)
 
| rgb(225,140,140)
−
|-  
+
|
−
| 2014  
+
|-
−
| right straight gyrus  
+
| 2014
 +
| right straight gyrus
 
| rgb(200,35,75)
 
| rgb(200,35,75)
−
|-  
+
|
−
| 2015  
+
|-
−
| right middle temporal gyrus  
+
| 2015
 +
| right middle temporal gyrus
 
| rgb(160,100,50)
 
| rgb(160,100,50)
−
|-  
+
|
−
| 2017  
+
|-
−
| right paracentral lobule  
+
| 2017
 +
| right paracentral lobule
 
| rgb(60,220,60)
 
| rgb(60,220,60)
−
|-  
+
|
−
| 2018  
+
|-
−
| opercular part of right inferior frontal gyrus  
+
| 2018
 +
| opercular part of right inferior frontal gyrus
 
| rgb(220,180,140)
 
| rgb(220,180,140)
−
|-  
+
|
−
| 2019  
+
|-
−
| orbital part of right inferior frontal gyrus  
+
| 2019
 +
| orbital part of right inferior frontal gyrus
 
| rgb(20,100,50)
 
| rgb(20,100,50)
−
|-  
+
|
−
| 2020  
+
|-
−
| triangular part of right inferior frontal gyrus  
+
| 2020
 +
| triangular part of right inferior frontal gyrus
 
| rgb(220,60,20)
 
| rgb(220,60,20)
−
|-  
+
|
−
| 2021  
+
|-
−
| right visual cortex  
+
| 2021
 +
| right visual cortex
 
| rgb(120,100,60)
 
| rgb(120,100,60)
−
|-  
+
|
−
| 2022  
+
|-
−
| right postcentral gyrus  
+
| 2022
 +
| right postcentral gyrus
 
| rgb(220,20,20)
 
| rgb(220,20,20)
−
|-  
+
|
−
| 2023  
+
|-
−
| right cingulate gyrus (1)  
+
| 2023
 +
| right cingulate gyrus (1)
 
| rgb(220,180,220)
 
| rgb(220,180,220)
−
|-  
+
|
−
| 2024  
+
|-
−
| right precentral gyrus  
+
| 2024
 +
| right precentral gyrus
 
| rgb(60,20,220)
 
| rgb(60,20,220)
−
|-  
+
|
−
| 2025  
+
|-
−
| right precuneus  
+
| 2025
 +
| right precuneus
 
| rgb(160,140,180)
 
| rgb(160,140,180)
−
|-  
+
|
−
| 2027  
+
|-
−
| right middle frontal gyrus (1)  
+
| 2027
 +
| right middle frontal gyrus (1)
 
| rgb(75,50,125)
 
| rgb(75,50,125)
−
|-  
+
|
−
| 2028  
+
|-
−
| right superior frontal gyrus  
+
| 2028
 +
| right superior frontal gyrus
 
| rgb(20,220,160)
 
| rgb(20,220,160)
−
|-  
+
|
−
| 2029  
+
|-
−
| right superior parietal lobule  
+
| 2029
 +
| right superior parietal lobule
 
| rgb(20,180,140)
 
| rgb(20,180,140)
−
|-  
+
|
−
| 2030  
+
|-
−
| right superior temporal gyrus (3)  
+
| 2030
 +
| right superior temporal gyrus (3)
 
| rgb(140,220,220)
 
| rgb(140,220,220)
−
|-  
+
|
−
| 2031  
+
|-
−
| right supramarginal gyrus  
+
| 2031
 +
| right supramarginal gyrus
 
| rgb(80,160,20)
 
| rgb(80,160,20)
−
|-  
+
|
−
| 2032  
+
|-
−
| right frontal pole  
+
| 2032
 +
| right frontal pole
 
| rgb(100,0,100)
 
| rgb(100,0,100)
−
|-  
+
|
−
| 2033  
+
|-
−
| right temporal pole  
+
| 2033
 +
| right temporal pole
 
| rgb(70,70,70)
 
| rgb(70,70,70)
−
|-  
+
|
−
| 2108  
+
|-
−
| right angular and supramarginal gyri  
+
| 2108
 +
| right angular and supramarginal gyri
 
| rgb(230,250,230)
 
| rgb(230,250,230)
−
|-  
+
|
−
| 3000  
+
|-
−
| right claustrum  
+
| 3000
 +
| right claustrum
 
| rgb(230,250,230)
 
| rgb(230,250,230)
−
|-  
+
|
−
| 3001  
+
|-
−
| left claustrum  
+
| 3001
 +
| left claustrum
 
| rgb(230,155,215)
 
| rgb(230,155,215)
−
|-  
+
|
−
| 3002  
+
|-
−
| right mamillary body  
+
| 3002
 +
| right mamillary body
 
| rgb(130,155,95)
 
| rgb(130,155,95)
−
|-  
+
|
−
| 3003  
+
|-
−
| left mamillary body  
+
| 3003
 +
| left mamillary body
 
| rgb(155,230,255)
 
| rgb(155,230,255)
−
|-  
+
|
−
| 3004  
+
|-
−
| corpus callosum  
+
| 3004
 +
| corpus callosum
 
| rgb(135,185,205)
 
| rgb(135,185,205)
−
|-  
+
|
−
| 3005  
+
|-
−
| right fornix of forebrain  
+
| 3005
 +
| right fornix of forebrain
 
| rgb(35,235,155)
 
| rgb(35,235,155)
−
|-  
+
|
−
| 3007  
+
|-
−
| left fornix of forebrain  
+
| 3007
 +
| left fornix of forebrain
 
| rgb(75,35,115)
 
| rgb(75,35,115)
−
|-  
+
|
−
| 3008  
+
|-
−
| infundibulum of neurohypophysis  
+
| 3008
 +
| infundibulum of neurohypophysis
 
| rgb(35,195,35)
 
| rgb(35,195,35)
−
|-  
+
|
−
| 3011  
+
|-
−
| adenohypophysis  
+
| 3011
 +
| adenohypophysis
 
| rgb(235,225,115)
 
| rgb(235,225,115)
−
|-  
+
|
−
| 3012  
+
|-
−
| neurohypophysis  
+
| 3012
 +
| neurohypophysis
 
| rgb(220,180,205)
 
| rgb(220,180,205)
−
|-  
+
|
 +
|-
 
|}
 
|}
 +
 +
=== Thalamic Nuclei Expansion ===
 +
{| class="wikitable sortable labelpage labelpagetable" border="1"
 +
! integer_label
 +
! text_label
 +
! color
 +
! notes
 +
|-
 +
| 500
 +
| internal medullar lamina R
 +
| rgb(200,200,200)
 +
|  style="background:#C8C8C8"|
 +
|-
 +
| 501
 +
| internal medullar lamina L
 +
| rgb(200,200,200)
 +
| style="background:#C8C8C8"|
 +
|-
 +
| 502
 +
| medial geniculate body R
 +
| rgb(125,250,21)
 +
| style="background:#7DFA15"|
 +
|-
 +
| 503
 +
| medial geniculate body L
 +
| rgb(125,250, 21)
 +
| style="background:#7DFA15"|
 +
|-
 +
| 504
 +
| lateral geniculate body R
 +
| rgb(102,178,255)
 +
| style="background:#66B2FF"|
 +
|-
 +
| 505
 +
| lateral geniculate body L
 +
| rgb(102,178,255)
 +
| style="background:#66B2FF"|
 +
|-
 +
| 506
 +
| pulvinar R
 +
| rgb(63,104,224)
 +
| style="background:#3F68E0"|
 +
|-
 +
| 507
 +
| pulvinar L
 +
| rgb(63,104,224)
 +
| style="background:#3F68E0"|
 +
|-
 +
| 508
 +
| anterior thalamic nucleus R
 +
| rgb(255,25,127)
 +
| style="background:#FF197F"|in the old SPL-BrainAtlas-Colorfile.txt ''L'' and ''R'' are mislabeled (switched)
 +
|-
 +
| 509
 +
| anterior thalamic nucleus L
 +
| rgb(255,25,127)
 +
| style="background:#FF197F"|in the old SPL-BrainAtlas-Colorfile.txt ''L'' and ''R'' are mislabeled (switched)
 +
|-
 +
| 510
 +
| dorsomedial thalamic nucleus R
 +
| rgb(60,189,130)
 +
| style="background:#3CBD82"|
 +
|-
 +
| 511
 +
| dorsomedial thalamic nucleus L
 +
| rgb(60,189,130)
 +
| style="background:#3CBD82"|
 +
|-
 +
| 512
 +
| centromedian thalamic nucleus R
 +
| rgb(188,181,105)
 +
| style="background:#BCB569"|
 +
|-
 +
| 513
 +
| centromedian thalamic nucleus L
 +
| rgb(188,181,105)
 +
| style="background:#BCB569"|
 +
|-
 +
| 514
 +
| ventral anterior thalamic nucleus R
 +
| rgb(254,213,0)
 +
| style="background:#FED500"|
 +
|-
 +
| 515
 +
| ventral anterior thalamic nucleus R
 +
| rgb(254,213,0)
 +
| style="background:#FED500"|
 +
|-
 +
| 516
 +
| ventral lateral thalamic nucleus R
 +
| rgb(60,180,180)
 +
| style="background:#3CB4B4"|
 +
|-
 +
| 517
 +
| ventral lateral thalamic nucleus L
 +
| rgb(60,180,180)
 +
| style="background:#3CB4B4"|
 +
|-
 +
| 518
 +
| lateral posterior thalamic nucleus R
 +
| rgb(204,127,0)
 +
| style="background:#CC7F00"|
 +
|-
 +
| 519
 +
| lateral posterior thalamic nucleus L
 +
| rgb(204,127,0)
 +
| style="background:#CC7F00"|
 +
|-
 +
| 520
 +
| lateral dorsal thalamic nucleus R
 +
| rgb(175,194,221)
 +
| style="background:#AFC2DD"|
 +
|-
 +
| 521
 +
| lateral dorsal thalamic nucleus L
 +
| rgb(175,194,221)
 +
| style="background:#AFC2DD"|
 +
|-
 +
| 522
 +
| VPM thalamic nucleus R
 +
| rgb(225,167,104)
 +
| style="background:#FFA768"|
 +
|-
 +
| 523
 +
| VPM thalamic nucleus L
 +
| rgb(225,167,104)
 +
| style="background:#FFA768"|
 +
|-
 +
| 524
 +
| VPL thalamic nucleus R
 +
| rgb(229,127,127)
 +
| style="background:#E57F7F"|
 +
|-
 +
| 525
 +
| VPL thalamic nucleus L
 +
| rgb(229,127,127)
 +
| style="background:#E57F7F"|
 +
|}
 +
 +
===Small addon table===
 +
{| class="wikitable sortable labelpage labelpagetable" border="1"
 +
|+ style="font-size: 1em; font-style: bold; background:white" | user interface colors
 +
! integer_label
 +
! text_label
 +
! color
 +
! notes
 +
|-
 +
| 0
 +
| background
 +
| rgb(0,0,0)
 +
| The background value is stored here because it isn't anatomical.
 +
|}
 +
 +
== Output color file ==
 +
An external script processes this page and produces the following color file, suitable for Slicer.
 +
 +
Pages suitable for generating Slicer color files should be marked with the Category "LabelPageSlicerColorFile".
 +
 +
TODO: Generate this file automatically as part of wiki editing.

Latest revision as of 15:55, 25 February 2010

Home < CCA:AtlasTools:LabelPage:Sample

Title

NAC CCA Core 2010 MRI Brain Atlas

Description

This file contains the label information that corresponds to the 2010 SPL Brain Atlas.

Credits

Author
Ion-Florin Talos MD
Michael Halle PhD
Institution
Center for Computational Anatomy Core
Neuroimage Analysis Center
Surgical Planning Lab
Brigham and Women's Hospital
Grants
National Institutes of Health (NIH)'s National Center for Research Resources (NCRR), NIH P41 RR13218.
Creation Date
02/16/2009

Imports

Links to other labeltag pages go here. The contents of those pages are imported before the data described on this page.

Lookup table information

These tables are just mediawiki tables with a couple of css classes included to make them sortable and declare them as Label Pages.

Generally, the workflow for Label Pages is to import an initial (and possibly large) table using a bulk data converter (say, from a CSV file), then make small edits through the wiki. The label tables can be broken up into smaller tables to make it easier to browse and edit them.

Atlas lookup table

integer_label text_label color notes
2 white matter of left cerebral hemisphere rgb(245,245,245)
4 left lateral ventricle rgb(120,18,134)
5 temporal horn of left lateral ventricle rgb(196,58,250)
7 white matter of cerebellum left rgb(221,248,164)
8 left cerebellar cortex rgb(230,148,34)
10 left thalamus rgb(0,118,14)
11 left caudate nucleus rgb(122,186,220)
12 left putamen rgb(236,13,176)
13 left globus pallidus pars externa rgb(12,48,255)
14 wall of third ventricle rgb(204,182,142)
15 fourth ventricle rgb(42,204,164)
17 left hippocampus rgb(220,216,20)
18 left amygdala rgb(103,255,255)
24 third ventricle (1) rgb(60,60,60)
25 left globus pallidus pars interna rgb(255,165,0)
26 left nucleus accumbens rgb(165,0,255)
27 left middle cerebellar peduncle rgb(0,255,127)
28 left hypothalamus rgb(165,42,42)
34 left superior cerebellar peduncle rgb(122,135,50)
35 pons rgb(51,50,135)
40 midbrain rgb(205,62,78)
41 white matter of right cerebral hemisphere rgb(0,225,0)
43 right lateral ventricle rgb(120,18,134)
44 temporal horn of right lateral ventricle rgb(196,58,250)
46 white matter of cerebellum right rgb(220,248,164)
47 right cerebellar cortex rgb(230,148,34)
49 right thalamus rgb(0,118,14)
50 right caudate nucleus rgb(122,186,220)
51 right putamen rgb(236,13,176)
52 right globus pallidus pars externa rgb(13,48,255)
53 right hippocampus rgb(220,216,20)
54 right amygdala rgb(103,255,255)
55 right insula rgb(80,196,98)
58 right nucleus accumbens rgb(255,165,0)
60 right hypothalamus rgb(165,42,42)
61 medulla oblongata rgb(135,206,235)
63 choroid plexus of right lateral ventricle rgb(0,200,221)
66 left substantia nigra rgb(122,135,50)
71 right substantia nigra rgb(122,135,50)
72 pineal body rgb(120,190,150)
78 left optic tract rgb(255,148,10)
79 left red nucleus rgb(255,148,10)
84 right red nucleus rgb(255,218,185)
85 optic chiasm rgb(234,169,30)
96 pellucid septum rgb(205,10,125)
100 left mammillothalamic tract rgb(124,140,178)
142 anterior commissure rgb(221,226,68)
200 right mammillothalamic tract rgb(0,50,128)
216 right optic tract rgb(255,204,102)
1000 left insula rgb(25,5,25)
1001 left superior temporal gyrus (1) rgb(25,100,40)
1002 left cingulate gyrus (1) rgb(125,100,160)
1003 left middle frontal gyrus (1) rgb(100,25,0)
1005 left cuneus rgb(220,20,100)
1006 left ambiens gyrus rgb(220,20,10)
1007 left fusiform gyrus rgb(180,220,140)
1008 left inferior parietal lobule rgb(220,60,220)
1009 left inferior temporal gyrus rgb(180,40,120)
1010 left cingulate gyrus (2) rgb(140,20,140)
1011 left lateral occipital gyrus rgb(20,30,140)
1012 left orbital gyri rgb(35,75,50)
1013 left lingual gyrus rgb(225,140,140)
1014 left straight gyrus rgb(200,35,75)
1015 left middle temporal gyrus rgb(160,100,50)
1017 left paracentral lobule rgb(20,220,60)
1018 opercular part of left inferior frontal gyrus rgb(60,220,60)
1019 orbital part of left inferior frontal gyrus rgb(220,180,140)
1020 triangular part of left inferior frontal gyrus rgb(220,60,20)
1021 left visual cortex rgb(120,100,60)
1022 left postcentral gyrus rgb(220,20,20)
1023 left cingulate gyrus (1) rgb(220,180,220)
1024 left precentral gyrus rgb(60,20,220)
1025 left precuneus rgb(160,140,180)
1026 left cingulate gyrus (3) rgb(80,20,140)
1027 left middle frontal gyrus (2) rgb(75,50,125)
1028 left superior frontal gyrus (1) rgb(20,220,160)
1029 left superior parietal lobule and precuneus rgb(20,180,140)
1030 left superior temporal gyrus rgb(140,220,220)
1031 left angular and supramarginal gyrus rgb(80,160,20)
1032 left frontal pole rgb(100,0,100)
1033 left temporal pole rgb(70,70,70)
1034 left transverse temporal gyri rgb(150,150,200)
2001 right superior temporal gyrus (2) rgb(25,100,40)
2003 right middle frontal gyrus (1) rgb(100,25,0)
2005 right cuneus rgb(220,20,100)
2006 right parahippocampal gyrus rgb(220,20,10)
2007 right fusiform gyrus rgb(180,220,140)
2008 right angular and supramarginal gyri rgb(220,60,220)
2009 right inferior temporal gyrus rgb(180,40,120)
2010 right cingulate gyrus (2) rgb(140,20,140)
2011 right lateral occipital gyrus rgb(20,30,140)
2012 right orbital gyri (1) rgb(35,75,50)
2013 right lingual gyrus rgb(225,140,140)
2014 right straight gyrus rgb(200,35,75)
2015 right middle temporal gyrus rgb(160,100,50)
2017 right paracentral lobule rgb(60,220,60)
2018 opercular part of right inferior frontal gyrus rgb(220,180,140)
2019 orbital part of right inferior frontal gyrus rgb(20,100,50)
2020 triangular part of right inferior frontal gyrus rgb(220,60,20)
2021 right visual cortex rgb(120,100,60)
2022 right postcentral gyrus rgb(220,20,20)
2023 right cingulate gyrus (1) rgb(220,180,220)
2024 right precentral gyrus rgb(60,20,220)
2025 right precuneus rgb(160,140,180)
2027 right middle frontal gyrus (1) rgb(75,50,125)
2028 right superior frontal gyrus rgb(20,220,160)
2029 right superior parietal lobule rgb(20,180,140)
2030 right superior temporal gyrus (3) rgb(140,220,220)
2031 right supramarginal gyrus rgb(80,160,20)
2032 right frontal pole rgb(100,0,100)
2033 right temporal pole rgb(70,70,70)
2108 right angular and supramarginal gyri rgb(230,250,230)
3000 right claustrum rgb(230,250,230)
3001 left claustrum rgb(230,155,215)
3002 right mamillary body rgb(130,155,95)
3003 left mamillary body rgb(155,230,255)
3004 corpus callosum rgb(135,185,205)
3005 right fornix of forebrain rgb(35,235,155)
3007 left fornix of forebrain rgb(75,35,115)
3008 infundibulum of neurohypophysis rgb(35,195,35)
3011 adenohypophysis rgb(235,225,115)
3012 neurohypophysis rgb(220,180,205)

Thalamic Nuclei Expansion

integer_label text_label color notes
500 internal medullar lamina R rgb(200,200,200)
501 internal medullar lamina L rgb(200,200,200)
502 medial geniculate body R rgb(125,250,21)
503 medial geniculate body L rgb(125,250, 21)
504 lateral geniculate body R rgb(102,178,255)
505 lateral geniculate body L rgb(102,178,255)
506 pulvinar R rgb(63,104,224)
507 pulvinar L rgb(63,104,224)
508 anterior thalamic nucleus R rgb(255,25,127) in the old SPL-BrainAtlas-Colorfile.txt L and R are mislabeled (switched)
509 anterior thalamic nucleus L rgb(255,25,127) in the old SPL-BrainAtlas-Colorfile.txt L and R are mislabeled (switched)
510 dorsomedial thalamic nucleus R rgb(60,189,130)
511 dorsomedial thalamic nucleus L rgb(60,189,130)
512 centromedian thalamic nucleus R rgb(188,181,105)
513 centromedian thalamic nucleus L rgb(188,181,105)
514 ventral anterior thalamic nucleus R rgb(254,213,0)
515 ventral anterior thalamic nucleus R rgb(254,213,0)
516 ventral lateral thalamic nucleus R rgb(60,180,180)
517 ventral lateral thalamic nucleus L rgb(60,180,180)
518 lateral posterior thalamic nucleus R rgb(204,127,0)
519 lateral posterior thalamic nucleus L rgb(204,127,0)
520 lateral dorsal thalamic nucleus R rgb(175,194,221)
521 lateral dorsal thalamic nucleus L rgb(175,194,221)
522 VPM thalamic nucleus R rgb(225,167,104)
523 VPM thalamic nucleus L rgb(225,167,104)
524 VPL thalamic nucleus R rgb(229,127,127)
525 VPL thalamic nucleus L rgb(229,127,127)

Small addon table

user interface colors
integer_label text_label color notes
0 background rgb(0,0,0) The background value is stored here because it isn't anatomical.

Output color file

An external script processes this page and produces the following color file, suitable for Slicer.

Pages suitable for generating Slicer color files should be marked with the Category "LabelPageSlicerColorFile".

TODO: Generate this file automatically as part of wiki editing.

Retrieved from "https://www.na-mic.org/w/index.php?title=CCA:AtlasTools:LabelPage:Sample&oldid=49426"