Difference between revisions of "Farsight nuclear segmentation as GoFigure plugin"
From NAMIC Wiki
Arnaudgelas (talk | contribs) |
|||
| (3 intermediate revisions by one other user not shown) | |||
| Line 2: | Line 2: | ||
<gallery> | <gallery> | ||
Image:PW-MIT2010.png|[[2010_Summer_Project_Week#Projects|Projects List]] | Image:PW-MIT2010.png|[[2010_Summer_Project_Week#Projects|Projects List]] | ||
| + | Image:Hippocampus.jpg|Farsight nuclei segmentation | ||
</gallery> | </gallery> | ||
==Key Investigators== | ==Key Investigators== | ||
* Harvard Medical School: Arnaud Gelas, Sean Megason | * Harvard Medical School: Arnaud Gelas, Sean Megason | ||
| − | * RPI: Badri Roysam | + | * RPI: Badri Roysam, Raghav Padmanabhan |
== Project == | == Project == | ||
| + | |||
| + | * GoFigure2 http://gofigure2.sourceforge.net | ||
| + | GoFigure2 is a software | ||
| + | |||
| + | * Farsight http://www.farsight-toolkit.org/wiki/Main_Page | ||
| + | Farsight project is Developing Quantitative Tools for Studying Complex and Dynamic Biological Micro-environments from 4D/5D Microscopy Data | ||
<div style="margin: 20px;"> | <div style="margin: 20px;"> | ||
Latest revision as of 17:57, 15 June 2010
Home < Farsight nuclear segmentation as GoFigure plugin
Farsight nuclei segmentation
Key Investigators
- Harvard Medical School: Arnaud Gelas, Sean Megason
- RPI: Badri Roysam, Raghav Padmanabhan
Project
- GoFigure2 http://gofigure2.sourceforge.net
GoFigure2 is a software
Farsight project is Developing Quantitative Tools for Studying Complex and Dynamic Biological Micro-environments from 4D/5D Microscopy Data
Objective
- Enable GoFigure2 plugin mechanism
- Develop one GoFigure2's plugin from Farsight nuclear segmentation
Approach, Plan
- Make a simple Image To Image plugin work into GoFigure2
- Download, build and install farsight
- Run Farsight nuclear segmentation as an executable
- Import results into GoFigure2 (see previous project)
- Make a plugin from this application
Progress
- GoFigure2's Image to Image plugins can be
- compiled
- loaded
- ran
- There is one bug when importing back the results of the plugin into GoFigure
