Difference between revisions of "Projects:ARRA:SlicerEM Meeting 07202010"
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= Attendants = | = Attendants = | ||
* Kilian Pohl | * Kilian Pohl | ||
| − | * Sebastien Barre | + | * Steve Pieper |
| + | * <del>Sebastien Barre</del> | ||
* Jean-Christophe Fillion-Robin | * Jean-Christophe Fillion-Robin | ||
* Julien Finet | * Julien Finet | ||
| + | |||
| + | = Resources = | ||
| + | See [http://wiki.na-mic.org/Wiki/index.php/Projects:ARRA:SlicerEM:Developer:ExampleWorkflow Example Workflow] | ||
= Questions = | = Questions = | ||
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</pre> | </pre> | ||
See [http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/EMSegment/Tcl/EMSegmentAutoSample.tcl?rev=13198&view=markup Modules/EMSegment/Tcl/EMSegmentAutoSample.tcl] | See [http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/EMSegment/Tcl/EMSegmentAutoSample.tcl?rev=13198&view=markup Modules/EMSegment/Tcl/EMSegmentAutoSample.tcl] | ||
| + | |||
| + | = Meeting note = | ||
| + | * Old pipeline method -> Slice 3.4, New pipeline method -> Slicer3.6 | ||
| + | * Focus should be on NewPipeline method | ||
| + | * Since TCL (according to Steve) should be available within Slicer4, the port of EMSegmentAutoSample related functionality is low priority | ||
Latest revision as of 22:17, 20 July 2010
Home < Projects:ARRA:SlicerEM Meeting 07202010Back to SlicerEM:Developer page
Purpose
- Address question related to EMSegmentLogic
Attendants
- Kilian Pohl
- Steve Pieper
Sebastien Barre- Jean-Christophe Fillion-Robin
- Julien Finet
Resources
See Example Workflow
Questions
- vtkSlicerEMSegmentLogic - Old vs New pipeline
What the status regarding the two sets of methods ?
- ComputeIntensityDistributionsFromSpatialPrior / UpdateIntensityDistributionAuto
int numTargetImages = workingTarget->GetNumberOfVolumes();
//
// // Sample
// {
// vtksys_stl::stringstream CMD ;
// CMD << "::EMSegmenterAutoSampleTcl::EMSegmentGaussCurveCalculationFromID " << vtkKWTkUtilities::GetTclNameFromPointer(app->GetMainInterp(), this->MRMLManager) << " 0.95 1 { " ;
// for (int i = 0 ; i < numTargetImages; i++) {
// CMD << workingTarget->GetNthVolumeNodeID(i) << " " ;
// }
// CMD << " } " << this->MRMLManager->GetVolumeNode(this->MRMLManager->GetTreeNodeSpatialPriorVolumeID(nodeID))->GetID() << " {" << this->MRMLManager->GetTreeNodeName(nodeID) << "} \n";
// // cout << CMD.str().c_str() << endl;
// if (atoi(app->Script(CMD.str().c_str()))) { return; }
// }
//
// //
// // propogate data to mrml node
// //
//
// vtkMRMLEMSTreeParametersLeafNode* leafNode = this->MRMLManager->GetTreeNode(nodeID)->GetParametersNode()->GetLeafParametersNode();
// for (int r = 0; r < numTargetImages; ++r)
// {
// {
// double value = atof(app->Script("expr $::EMSegment(GaussCurveCalc,Mean,%d)",r));
// leafNode->SetAutoLogMean(r, value);
// }
// for (int c = 0; c < numTargetImages; ++c)
// {
// double value = atof(app->Script("expr $::EMSegment(GaussCurveCalc,Covariance,%d,%d)",r,c));
// leafNode->SetAutoLogCovariance(r, c, value);
// }
// }
See Modules/EMSegment/Tcl/EMSegmentAutoSample.tcl
Meeting note
- Old pipeline method -> Slice 3.4, New pipeline method -> Slicer3.6
- Focus should be on NewPipeline method
- Since TCL (according to Steve) should be available within Slicer4, the port of EMSegmentAutoSample related functionality is low priority
