Difference between revisions of "DBP2:UNCFinal:2010"

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  [[DBP2:Main|back to DBP2 Main]]
 
  [[DBP2:Main|back to DBP2 Main]]
  
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*Short description of the project
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__NOTOC__
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*Listing of the paper(s) in PubDB
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*Listing and short description of the software that will run in Slicer 3.6.1 and what it will accomplish
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=Overview=
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*Listing and short description of the sample data
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=Software=
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*ARCTIC: Automatic Regional Cortical ThICkness
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** Description:
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***ARCTIC is an end-to-end application allowing individual analysis of cortical thickness
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***Pipeline: performs tissue segmentation, regional atlas deformable registration, cortical thickness measurements, volume information stored in spreadsheets
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***Visualization: white matter and gray matter mesh creation
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***Quality control: optimal QC via 3D Slicer MRML scenes
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**Download:
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****Source code, executables and tutorial are available on [http://www.nitrc.org/projects/arctic NITRC]
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**Documentation:
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***[http://www.nitrc.org/plugins/mwiki/index.php/arctic:MainPage NITRC wiki page]
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***[http://www.slicer.org/slicerWiki/index.php/Modules:ARCTIC-Documentation-3.6 Slicer 3.6 documentation]
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**Tutorials:
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***'''ARCTIC tutorial''' : end-to-end Slicer3 module to perform automatic regional cortical thickness analysis[[Media:ARCTIC-Slicer3-Tutorial.ppt|‏ [ppt]]][[Media:ARCTIC-Slicer3-Tutorial.pdf|‏ [pdf]]]
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***'''[http://www.slicer.org/slicerWiki/index.php/Modules:ARCTIC-Documentation-3.6 Online documentation within Slicer 3.6]'''
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***[http://www.nitrc.org/frs/download.php/545/ARCTIC_Tutorial_example_1.0.zip Download ARCTIC Example dataset]
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*GAMBIT
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**
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=Listing and short description of the sample data=
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*Pediatric Brain MRI data
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**[http://insight-journal.org/midas/community/view/24 Data of 2 autistic children and 2 normal controls] (male, female) scanned at 2 years with follow up at 4 years from a 1.5T Siemens scanner. Files include structural data, tissue segmentation label map and subcortical structures segmentation.
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*ARCTIC Tutorial dataset:
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**[http://www.nitrc.org/frs/download.php/545/ARCTIC_Tutorial_example_1.0.zip Download Example dataset]
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*Brain Atlases
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**[http://www.insight-journal.org/midas/item/view/2277 Pediatric atlas]
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**[http://www.insight-journal.org/midas/item/view/2328 Adult atlas]
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**[http://www.insight-journal.org/midas/item/view/2330 Elderly atlas]
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**[http://www.insight-journal.org/midas/item/view/2283 Primate atlas]
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=Related pages=
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*[http://www.slicer.org/pages/Special:SlicerDownloads Slicer 3.6 download]
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*[http://www.slicer.org/slicerWiki/index.php/Documentation-3.6 Slicer 3.6 documentation]
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=References=
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H.C. Hazlett, C. Vachet, C. Mathieu, M. Styner, J. Piven, Use of the Slicer3 Toolkit to Produce Regional Cortical Thickness Measurement of Pediatric MRI Data, presented at the 8th Annual International Meeting for Autism Research (IMFAR) Chicago, IL 2009

Revision as of 19:00, 27 October 2010

Home < DBP2:UNCFinal:2010
back to DBP2 Main


Overview

Software

  • ARCTIC: Automatic Regional Cortical ThICkness
    • Description:
      • ARCTIC is an end-to-end application allowing individual analysis of cortical thickness
      • Pipeline: performs tissue segmentation, regional atlas deformable registration, cortical thickness measurements, volume information stored in spreadsheets
      • Visualization: white matter and gray matter mesh creation
      • Quality control: optimal QC via 3D Slicer MRML scenes
    • Download:
        • Source code, executables and tutorial are available on NITRC
    • Documentation:
    • Tutorials:
  • GAMBIT


Listing and short description of the sample data

  • Pediatric Brain MRI data

Related pages

References

H.C. Hazlett, C. Vachet, C. Mathieu, M. Styner, J. Piven, Use of the Slicer3 Toolkit to Produce Regional Cortical Thickness Measurement of Pediatric MRI Data, presented at the 8th Annual International Meeting for Autism Research (IMFAR) Chicago, IL 2009

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