Difference between revisions of "DBP2:UNCFinal:2010"
From NAMIC Wiki
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*ARCTIC: Automatic Regional Cortical ThICkness | *ARCTIC: Automatic Regional Cortical ThICkness | ||
** Description: | ** Description: | ||
| − | ***ARCTIC is an end-to-end application allowing individual analysis of cortical thickness | + | ***ARCTIC is an end-to-end application allowing individual lobar analysis of cortical thickness |
***Pipeline: performs tissue segmentation, regional atlas deformable registration, cortical thickness measurements, volume information stored in spreadsheets | ***Pipeline: performs tissue segmentation, regional atlas deformable registration, cortical thickness measurements, volume information stored in spreadsheets | ||
***Visualization: white matter and gray matter mesh creation | ***Visualization: white matter and gray matter mesh creation | ||
***Quality control: optimal QC via 3D Slicer MRML scenes | ***Quality control: optimal QC via 3D Slicer MRML scenes | ||
**Download: | **Download: | ||
| − | ****Source code, executables and tutorial are available on [http://www.nitrc.org/projects/arctic NITRC] | + | ***Latest stable version is directly available as an extension in [http://www.slicer.org/pages/Special:SlicerDownloads Slicer 3.6.1 release] and soon in Slicer 3.6.2 |
| + | ***Source code, executables and tutorial are available on [http://www.nitrc.org/projects/arctic NITRC] | ||
**Documentation: | **Documentation: | ||
***[http://www.nitrc.org/plugins/mwiki/index.php/arctic:MainPage NITRC wiki page] | ***[http://www.nitrc.org/plugins/mwiki/index.php/arctic:MainPage NITRC wiki page] | ||
***[http://www.slicer.org/slicerWiki/index.php/Modules:ARCTIC-Documentation-3.6 Slicer 3.6 documentation] | ***[http://www.slicer.org/slicerWiki/index.php/Modules:ARCTIC-Documentation-3.6 Slicer 3.6 documentation] | ||
**Tutorials: | **Tutorials: | ||
| − | *** | + | ***ARCTIC tutorials: [[Media:ARCTIC-Slicer3-Tutorial.ppt| [ppt]]][[Media:ARCTIC-Slicer3-Tutorial.pdf| [pdf]]] |
| − | *** | + | **** 1st Prize: NAMIC tutorial contest AHM 2009 |
| + | **** 2nd Prize: NAMIC tutorial contest summer project week 2009 | ||
| + | ***[http://www.slicer.org/slicerWiki/index.php/Modules:ARCTIC-Documentation-3.6 Online documentation within Slicer 3.6] | ||
***[http://www.nitrc.org/frs/download.php/545/ARCTIC_Tutorial_example_1.0.zip Download ARCTIC Example dataset] | ***[http://www.nitrc.org/frs/download.php/545/ARCTIC_Tutorial_example_1.0.zip Download ARCTIC Example dataset] | ||
| Line 44: | Line 47: | ||
=References= | =References= | ||
| − | H.C. Hazlett, C. Vachet, C. Mathieu, M. Styner, J. Piven, Use of the Slicer3 Toolkit to Produce Regional Cortical Thickness Measurement of Pediatric MRI Data, presented at the 8th Annual International Meeting for Autism Research (IMFAR) Chicago, IL 2009 | + | *H.C. Hazlett, C. Vachet, C. Mathieu, M. Styner, J. Piven, Use of the Slicer3 Toolkit to Produce Regional Cortical Thickness Measurement of Pediatric MRI Data, presented at the 8th Annual International Meeting for Autism Research (IMFAR) Chicago, IL 2009 |
| + | *C. Mathieu, C. Vachet, H.C. Hazlett, G. Geric, J. Piven, and M. Styner, ARCTIC – Automatic Regional Cortical ThICkness Tool, UNC Radiology Research Day 2009 abstract | ||
Revision as of 19:16, 27 October 2010
Home < DBP2:UNCFinal:2010back to DBP2 Main
Overview
Software
- ARCTIC: Automatic Regional Cortical ThICkness
- Description:
- ARCTIC is an end-to-end application allowing individual lobar analysis of cortical thickness
- Pipeline: performs tissue segmentation, regional atlas deformable registration, cortical thickness measurements, volume information stored in spreadsheets
- Visualization: white matter and gray matter mesh creation
- Quality control: optimal QC via 3D Slicer MRML scenes
- Download:
- Latest stable version is directly available as an extension in Slicer 3.6.1 release and soon in Slicer 3.6.2
- Source code, executables and tutorial are available on NITRC
- Documentation:
- Tutorials:
- ARCTIC tutorials: [ppt] [pdf]
- 1st Prize: NAMIC tutorial contest AHM 2009
- 2nd Prize: NAMIC tutorial contest summer project week 2009
- Online documentation within Slicer 3.6
- Download ARCTIC Example dataset
- ARCTIC tutorials: [ppt] [pdf]
- Description:
- GAMBIT
Listing and short description of the sample data
- Pediatric Brain MRI data
- Data of 2 autistic children and 2 normal controls (male, female) scanned at 2 years with follow up at 4 years from a 1.5T Siemens scanner. Files include structural data, tissue segmentation label map and subcortical structures segmentation.
- ARCTIC Tutorial dataset:
- Brain Atlases
Related pages
References
- H.C. Hazlett, C. Vachet, C. Mathieu, M. Styner, J. Piven, Use of the Slicer3 Toolkit to Produce Regional Cortical Thickness Measurement of Pediatric MRI Data, presented at the 8th Annual International Meeting for Autism Research (IMFAR) Chicago, IL 2009
- C. Mathieu, C. Vachet, H.C. Hazlett, G. Geric, J. Piven, and M. Styner, ARCTIC – Automatic Regional Cortical ThICkness Tool, UNC Radiology Research Day 2009 abstract
