Revision as of 14:10, 24 November 2010

Home < 2011 Winter Project Week:Breakout Slicer with Ron

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Moderator: Ron Kikinis

Introduction

This is an advanced topic presentation on Slicer abilities. The intention is to familiarize the NA-MIC community with Slicer abilities.
You have mastered the introductions and you are hungry for more.... :)
- This means that we expect you to at least have worked through the Core Tutorials before this class.
Ron and the creators of modules will show you advanced capabilities in Slicer 3.6

Registration (Dominik Meier, Hans Johnson)
- Register everything to the SPGR data: complete. Data, transforms and instructions available here: Reg.Lib Case 33
- additional info:
- Resample as needed (DTI, T2 Baseline):
  - transforms available here: Reg.Lib Case 33
Compareview (Jim Miller)
Scenesnapshots (Wendy Plesniak, Alex Yarmarkovic)
Simple measurements and fiducials (Nicole Aucoin)
Interactive editor (Steve Pieper)
Fast segmenters: Fast Marching, RSS, GrowCutSegment (Andrey Fedorov, Yi Gao, Harini Veeraraghavan)
- preliminary scene from Andrey (details to be added)
DTI processing (Alex Yarmarkovic, Demian Wasserman)
Volume Cropping (Andrey Fedorov)
Keyboard and mouse shortcuts (Steve Pieper)
Volume Rendering (Yanling Liu/Alex Yarmarkovic)
EM segmentation (Kilian Pohl)

@@ Line 30: / Line 30: @@
 *Registration (Dominik Meier, Hans Johnson)
 **Register everything to the SPGR data: complete. Data, transforms and instructions available here: [[Projects:RegistrationLibrary:RegLib_C33|'''Reg.Lib Case 33''']]
-**additional info: [[Projects:SlicerFAQ:DWI_Registration|basic concept and outline of DTI registration (cookbook) on FAQ]]
+**additional info:
-***[[Projects:SlicerFAQ:DWI_Registration#Caveats|List of special caveats pertaining to DTI registration and resampling]]
+***[[Projects:SlicerFAQ:DWI_Registration|basic concept and outline of DTI registration (cookbook) on FAQ]], incl. [[Projects:SlicerFAQ:DWI_Registration#Caveats|List of special caveats pertaining to DTI registration and resampling]]
 ***[[Projects:RegistrationDocumentation:UseCaseInventory:BrainIntraDTI|overview of all DTI cases currently in the registration case library]]
 ***similar cases that required different approaches [[Projects:RegistrationLibrary:RegLib_C29|'''Case 29''': DWI -> T2 -> T1 (direct to T1 fails)]], [[Projects:RegistrationLibrary:RegLib_C03|'''Case 03''': low resol. & anisotropy require resampling, masking & manual initial alignment]], [[Projects:RegistrationLibrary:RegLib_C27|'''Case 27''': anisotropy required prior DWI resampling prior to conversion]]