Projects:ARRA:SlicerEM:AtlasCreator:Tests

Atlas Creator Tests

Successful tests running the Atlas Creator are shown here.

01: Fixed with CMTK on 6 Cases

• Machine: b2-t74-2
  • CPU: 4x Xeon 3 GHz
  • RAM: 32 GB
  • OS: Linux 64
  • AtlasCreator Version: 0.21

• No. of Cases: 6 (5 against 1 template)
• Template Type: Fixed
• Toolkit: CMTK
• Registration Type: Affine
• Runtime: 11 minutes

• Log: File:Log.txt
• MRML Scene: File:01cmtkFixed.zip

• 

  Fixed Template

• 

  Combined Atlas output

• 

  Atlas for label 3 output

• 

  Atlas for label 4 output

• 

  Atlas for label 5 output

• 

  Atlas for label 6 output

• 

  Atlas for label 8 output

• 

  Atlas for label 10 output

• 

  Checkerboard: Before-Template and After-Template

• 

  Checkerboard: Before-Template and After-Template 2

02: Fixed with BRAINSFit on 6 Cases

• Machine: ?
  • CPU: ?
  • RAM: ?
  • OS: ?
  • AtlasCreator Version: 0.21

• No. of Cases: 6 (5 against 1 template)
• Template Type: Fixed
• Toolkit: BRAINSFit
• Registration Type: Affine
• Runtime: XX minutes

• Log: File:02Log.txt
• MRML Scene: File:02brainsfitFixed.zip

• 02template.png

  Fixed Template

• 02atlas.png

  Combined Atlas output

• 02atlas3.png

  Atlas for label 3 output

• 02atlas4.png

  Atlas for label 4 output

• 02atlas5.png

  Atlas for label 5 output

• 02atlas6.png

  Atlas for label 6 output

• 02atlas8.png

  Atlas for label 8 output

• 02atlas10.png

  Atlas for label 10 output

• 02exampleBeforeAndAfter.png

  Checkerboard: Before-Template and After-Template

• 02exampleBeforeAndAfter2.png

  Checkerboard: Before-Template and After-Template 2

03: Dynamic with CMTK on 6 Cases

• Machine: sbia-pc66
  • CPU: 4x Core i7 2.66 GHz
  • RAM: 8 GB
  • OS: Mac OS X Snow Leopard
  • AtlasCreator Version: 0.21

• No. of Cases: 6
• Template Type: Dynamic
• Iterations: 2
• Toolkit: CMTK
• Registration Type: Affine
• Runtime: 28 minutes

• Log: File:03Log.txt
• MRML Scene: File:03cmtkDynamic.zip

• 

  Dynamic Template

• 

  Combined Atlas output

• 

  Atlas for label 3 output

• 

  Atlas for label 4 output

• 

  Atlas for label 5 output

• 

  Atlas for label 6 output

• 

  Atlas for label 7 output

• 

  Atlas for label 8 output

• 

  Atlas for label 9 output

• 

  Atlas for label 10 output

• 

  Atlas for label 31 output

• 

  Atlas for label 32 output

• 

  Checkerboard: Before-Template and After-Template

04: Dynamic with BRAINSFit on 6 Cases

• Machine: sbia-pc66
  • CPU: 4x Core i7 2.66 GHz
  • RAM: 8 GB
  • OS: Mac OS X Snow Leopard
  • AtlasCreator Version: 0.21

• No. of Cases: 6
• Template Type: Dynamic
• Iterations: 2
• Toolkit: BRAINSFit
• Registration Type: Affine
• Runtime: 64 minutes

• Log: File:04Log.txt
• MRML Scene: File:04brainsfitDynamic.zip

• 

  Dynamic Template

• 

  Combined Atlas output

• 

  Atlas for label 3 output

• 

  Atlas for label 4 output

• 

  Atlas for label 5 output

• 

  Atlas for label 6 output

• 

  Atlas for label 7 output

• 

  Atlas for label 8 output

• 

  Atlas for label 9 output

• 

  Atlas for label 10 output

• 

  Atlas for label 31 output

• 

  Atlas for label 32 output

• 

  Checkerboard: Before-Template and After-Template

05: Fixed with CMTK on 50 Cases

• Machine: b2-t74-3
  • CPU: 4x Xeon 3 GHz
  • RAM: 32 GB
  • OS: Linux 64
  • AtlasCreator Version: 0.21

• No. of Cases: 50 (49 against 1 template), skull-stripped + bias corrected
• Template Type: Fixed
• Toolkit: CMTK
• Registration Type: Affine
• Runtime: 162 minutes

• Log: File:05CmtkFixed.txt
• MRML Scene: File:05cmtkFixed.zip

• 

  Fixed Template

• 

  Combined Atlas output

• 

  Atlas for label 3 output

• 

  Atlas for label 4 output

• 

  Atlas for label 5 output

• 

  Atlas for label 6 output

• 

  Atlas for label 7 output

• 

  Atlas for label 8 output

• 

  Atlas for label 9 output

• 

  Atlas for label 10 output

• 

  Atlas for label 31 output

• 

  Atlas for label 32 output

• 

  Checkerboard: Before-Template and After-Template

06: Fixed with BRAINSFit on 50 Cases

• Machine: b2-t74-3
  • CPU: 4x Xeon 3 GHz
  • RAM: 32 GB
  • OS: Linux 64
  • AtlasCreator Version: 0.21

• No. of Cases: 50 (49 against 1 template), skull-stripped + bias corrected
• Template Type: Fixed
• Toolkit: BRAINSFit
• Registration Type: Affine
• Runtime: 241 minutes

• Log: File:06brainsfitFixed.txt
• MRML Scene: File:06brainsfitFixed.zip

• 

  Fixed Template

• 

  Combined Atlas output

• 

  Atlas for label 3 output

• 

  Atlas for label 4 output

• 

  Atlas for label 5 output

• 

  Atlas for label 6 output

• 

  Atlas for label 7 output

• 

  Atlas for label 8 output

• 

  Atlas for label 9 output

• 

  Atlas for label 10 output

• 

  Atlas for label 31 output

• 

  Atlas for label 32 output

• 

  Checkerboard: Before-Template and After-Template