Difference between revisions of "Projects:ARRA:SlicerWF:PETCTWorkflow"
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*[[Projects:ARRA:SlicerWF:PETCTWorkflowDesign| PETCT Workflow Design Page]] | *[[Projects:ARRA:SlicerWF:PETCTWorkflowDesign| PETCT Workflow Design Page]] | ||
| + | * 2011-03 Change Requests:<br> | ||
| + | 1) Segment and compute tumor volume for contrast-enhanced MRI scans. [Will provide with instructions for threshold based segmentation and include MRML Scene load to GUI] | ||
| + | |||
* 2011-02 Change Requests:<br> | * 2011-02 Change Requests:<br> | ||
| − | 1) Add MRI (T1 , FLAIR) for aiding the VOI drawing <br> | + | 1) Add MRI (T1 , FLAIR) for aiding the VOI drawing <br> [done] <br> |
| − | 2) Add labels for additional VOIs <br> | + | 2) Add labels for additional VOIs <br> [done] <br> |
| − | 3) Compute SUVs for entire brain (will run on a separate label map devoted for ICC) <br> | + | 3) Compute SUVs for entire brain (will run on a separate label map devoted for ICC) <br> [pending] <br> |
| − | 4) Segment MRI and compute brain parenchymal fraction <br> | + | 4) Segment MRI and compute brain parenchymal fraction <br> [in progress - separate EM Segmentation Workflow Module will be provided] <br> |
5) Based on segmentation results in 4), compute SUVs for CSF and All White matter) <br> | 5) Based on segmentation results in 4), compute SUVs for CSF and All White matter) <br> | ||
| − | 6) Add total counts for a given VOI <br> | + | 6) Add total counts for a given VOI <br> [pending] <br> |
| − | 7) Generate denormalized Excel files out of unpivoted SUV outputs. User wants all labels <br> | + | 7) Generate denormalized Excel files out of unpivoted SUV outputs. User wants all labels <br> to be listed as table headers. Make separate files for SUV Max, SUV Avg, SUV Total Counts <br> |
| − | to be listed as table headers. Make separate files for SUV Max, SUV Avg, SUV Total Counts | + | [Done for SUV Max and SUV Avg] <br> |
Latest revision as of 21:11, 17 March 2011
Home < Projects:ARRA:SlicerWF:PETCTWorkflow- 2011-03 Change Requests:
1) Segment and compute tumor volume for contrast-enhanced MRI scans. [Will provide with instructions for threshold based segmentation and include MRML Scene load to GUI]
- 2011-02 Change Requests:
1) Add MRI (T1 , FLAIR) for aiding the VOI drawing
[done]
2) Add labels for additional VOIs
[done]
3) Compute SUVs for entire brain (will run on a separate label map devoted for ICC)
[pending]
4) Segment MRI and compute brain parenchymal fraction
[in progress - separate EM Segmentation Workflow Module will be provided]
5) Based on segmentation results in 4), compute SUVs for CSF and All White matter)
6) Add total counts for a given VOI
[pending]
7) Generate denormalized Excel files out of unpivoted SUV outputs. User wants all labels
to be listed as table headers. Make separate files for SUV Max, SUV Avg, SUV Total Counts
[Done for SUV Max and SUV Avg]
