Difference between revisions of "2011 Summer Project Week Integrate BRAINSCut into Slicer3"
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<gallery> | <gallery> | ||
Image:PW-MIT2011.png|[[2011_Summer_Project_Week#Projects|Projects List]] | Image:PW-MIT2011.png|[[2011_Summer_Project_Week#Projects|Projects List]] | ||
− | File:BRAINSCutFigure.png|BRAINSCut Result Example After Rendering with Slicer Model Maker | + | File:BRAINSCutFigure.png|BRAINSCut: Result Example After Rendering with Slicer Model Maker |
− | File:ProbabilityMaps.png|BRAINSCut Probability Map Example for Sub-cortical regions of brain to identify ROI | + | File:ProbabilityMaps.png|BRAINSCut: Probability Map Example for Sub-cortical regions of brain to identify ROI |
+ | File:GradientFeatureComparison.png |BRAINSCut: One of Feature Images. | ||
+ | File:Caudates.pdf|BRAINSCut: Caudate test statistics between BRAINSCut output and Manual Traces | ||
+ | File:Putamens.pdf|BRAINSCut: Putamen test statistics between BRAINSCut output and Manual Trace | ||
+ | File:Thalamus.pdf|BRAINSCut: Thalamus test statistics between BRAINSCut output and Manual Trace | ||
+ | File:HippoWithSOnly.pdf|BRAINSCut: Hippocampus test statistics between BRAINSCut output and Manual Trace | ||
</gallery> | </gallery> | ||
Revision as of 17:31, 23 June 2011
Home < 2011 Summer Project Week Integrate BRAINSCut into Slicer3Integrate BRAINSCut into Slicer3
Key Investigators
- University of Iowa: Eunyoung(Regina) Kim
Objective
- Integration of BRAINSCut into Slicer3/Slicer4
- Integration of GMI feature images into BRAINSCut
- Test BRAINSCut
Approach, Plan
- Check dependencies of BRAINSCut
- and integrate into Slicer CLM.
Progress
References
- Powell, S., Magnotta, V., Johnson, H., and . . . , V. J., “Registration and machine learning-based automated segmentation of subcortical and cerebellar brain . . . ,” NeuroImage (Jan 2008)
- Eun Young Kim, Hans Johnson, "Multi-structure segmentation of multi-modal brain images using artificial neural networks", SPIE Proceedings Paper(Mar 2010)
Download Page
http://www.nitrc.org/projects/brainscut
Delivery Mechanism
This work will be delivered to the NAMIC Kit as a
- NITRIC distribution
- Slicer Module
- Built-in:
- Extension -- commandline:
- Extension -- loadable: