Difference between revisions of "2011 Summer Project Week Plastimatch for EMSegmenter"
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| − | We added plastimatch to the EMSegmenter GUI and integrated some base code to call plastimatch. | + | We added plastimatch to the EMSegmenter GUI and integrated some base code to call plastimatch.<br> |
| − | Fixed compiler issue on i386 for stand-alone plastimatch and Slicer's plastimatch extension. | + | Fixed compiler issue on i386 for stand-alone plastimatch and Slicer's plastimatch extension.<br> |
| − | Now we have a nighly plastimatch-slicer extension for Linux 32 bit. | + | Now we have a nighly plastimatch-slicer extension for Linux 32 bit.<br> |
<br> | <br> | ||
Open: We have to add an option to plastimatch_slicer_xformwarp to set the target grid. <br> | Open: We have to add an option to plastimatch_slicer_xformwarp to set the target grid. <br> | ||
Revision as of 19:45, 23 June 2011
Home < 2011 Summer Project Week Plastimatch for EMSegmenter- Notfound.png
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Full Title of Project
Key Investigators
- University of Pennsylvania: Dominique Belhachemi
- University of Pennsylvania: Kilian Pohl
- University of Pennsylvania: Daniel Haehn
- MGH: Greg Sharp
Objective
During the EMSegmenter's pre-processing we have to register our internal atlas to the subject scan. Currently we support two registration tools:
1. BRAINSFit
2. CMTK
We would like to add "plastimatch" to this list.
Approach, Plan
Investigating the commandline interface of plastimatch.
Find the right parameter for our use cases.
Progress
We added plastimatch to the EMSegmenter GUI and integrated some base code to call plastimatch.
Fixed compiler issue on i386 for stand-alone plastimatch and Slicer's plastimatch extension.
Now we have a nighly plastimatch-slicer extension for Linux 32 bit.
Open: We have to add an option to plastimatch_slicer_xformwarp to set the target grid.
Open: Find the right parameter for our CT use cases.
References
http://plastimatch.org/
http://www.slicer.org/slicerWiki/index.php/EMSegmenter-Tasks
Delivery Mechanism
This work will be delivered to the NAMIC Kit as part of the EMSegmenter module.
