Difference between revisions of "TrainingDataGallery"

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[Under construction]
 
  
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[[NA-MIC_Training_Portal | NA-MIC Training Portal]]
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==NA-MIC Training Gallery (under construction) ==
 
This page is a gallery of the training datasets available to work with Slicer3.
 
This page is a gallery of the training datasets available to work with Slicer3.
 
-->Suggested attributes; Snapshots, Data Type, Size and Acquisition modality.
 
-->Suggested attributes; Snapshots, Data Type, Size and Acquisition modality.
  
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{| border="1" cellpadding="2" reflist="2"  
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{| border="1" cellpadding="5"
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|[[File:BrainH.png|200px|center|link=http://www.slicer.org/slicerWiki/images/5/51/Slicer3MinuteDataset.zip]]
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| style="width:12.5%" |
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| style="width:25%" |
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| style="width:12.5%" |
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| style="width:25%" |
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|[[File:3minute_small.jpg|200px|center|link=http://www.slicer.org/slicerWiki/images/5/51/Slicer3MinuteDataset.zip]]
 
|style="background:LightGrey; color:Black; font-size:100%" align="Left"| <span id="1.1"></span>'''Slicer 3 Minute'''<br>
 
|style="background:LightGrey; color:Black; font-size:100%" align="Left"| <span id="1.1"></span>'''Slicer 3 Minute'''<br>
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'''Data Type:''' nrrd, vtk, mrml<br> '''Size:''' 15.9MB <br>'''Acquisition Modality:''' MRI<br>'''Description:''' This dataset contains an MR scan of the brain and 3D reconstructions of the anatomy, and is an introduction to the advanced 3D visualization capabilities of Slicer3.4.  
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'''Data Type:''' nrrd, vtk, mrml<br> '''Size:''' 15.9MB <br>'''Acquisition Modality:''' MRI<br>'''Description:''' This dataset contains an MR scan of the brain and 3D reconstructions of the anatomy.  
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|[[File:BrainH.png|200px|center|link=http://www.slicer.org/slicerWiki/images/8/88/Slicer3_Tutorial_ManualRegistration_ExampleDataset.zip]]
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|[[File:manreg.png|200px|center|link=http://www.slicer.org/slicerWiki/images/8/88/Slicer3_Tutorial_ManualRegistration_ExampleDataset.zip]]
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|style="background:LightGrey; color:Black; font-size:100%" align="Left"| <span id="1.1"></span>'''Manual Registration'''<br>
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|style="background:LightGrey; color:Black; font-size:100%" align="Left" | <span id="1.1"></span>'''Manual Registration'''<br>
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'''Data Type:''' nrrd, vtk, mrml <br>'''Size:''' 14.6MB <br>'''Acquisition Modality:''' MRI <br>'''Description:''' This dataset contains two brain MRI of a single subject, obtained in different orientations, and shows how to manually/interactively align two images in Slicer3.4 or 3.5.
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'''Data Type:''' nrrd, mrml <br>'''Size:''' 14.6MB <br>'''Acquisition Modality:''' MRI <br>'''Description:''' This dataset contains two brain MRI of a single subject.
 
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||[[File:ProgrammingCourse_Logo.PNG|200px|center|link=http://www.slicer.org/slicerWiki/images/2/20/HelloWorld_Plugin.zip]]
 
||[[File:ProgrammingCourse_Logo.PNG|200px|center|link=http://www.slicer.org/slicerWiki/images/2/20/HelloWorld_Plugin.zip]]
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|style="background:LightGrey; color:Black; font-size:100%" align="Left"| <span id="1.1"></span>'''Programming in Slicer3'''<br>
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|style="background:LightGrey; color:Black; font-size:100%" align="Left" | <span id="1.1"></span>'''Programming in Slicer3'''<br>
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'''Data Type:''' nhdr, xml, txt<br> '''Size:''' 6.4MB <br>'''Acquisition Modality:''' MRI<br>'''Description:'''This is an introduction to the the integration of stand-alone programs outside of the Slicer3 source tree, and contains an MR scan of the brain and pre-computed xml and C++ files for integrating the Hello World plug-in to Slicer3.  
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'''Data Type:''' nhdr, xml, txt<br> '''Size:''' 6.4MB <br>'''Acquisition Modality:''' MRI<br>'''Description:'''This contains an MR scan of the brain and pre-computed xml and C++ files for integrating the Hello World plug-in to Slicer3.  
 
|[[File:FreeSurferSlicerModule.png|200px|center|link=http://www.na-mic.org/Wiki/index.php/File:FreeSurferTutorialData.zip]]
 
|[[File:FreeSurferSlicerModule.png|200px|center|link=http://www.na-mic.org/Wiki/index.php/File:FreeSurferTutorialData.zip]]
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|style="background:LightGrey; color:Black; font-size:100%" align="Left"| <span id="1.1"></span>'''3D Visualization of Freesurfer Data'''<br>
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|style="background:LightGrey; color:Black; font-size:100%" align="Left" | <span id="1.1"></span>'''3D Visualization of Freesurfer Data'''<br>
 
'''Data Type:''' mgz<br> '''Size:''' 221MB <br>'''Acquisition Modality:''' MRI<br>'''Description:'''The FreeSurfer dataset contains an MR scan of the brain and pre-computed FreeSurfer segmentation and cortical surface reconstructions.  
 
'''Data Type:''' mgz<br> '''Size:''' 221MB <br>'''Acquisition Modality:''' MRI<br>'''Description:'''The FreeSurfer dataset contains an MR scan of the brain and pre-computed FreeSurfer segmentation and cortical surface reconstructions.  
 
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|[[File:DataLoadingAndVisualization_SPujol.png|200px|center|link=http://www.slicer.org/slicerWiki/images/6/61/Slicer3VisualizationDataset.zip]]
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|style="background:LightGrey; color:Black; font-size:100%" align="Left"| <span id="1.1"></span>'''Slicer3 Visualization'''<br>
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'''Data Type:''' nrrd, vtk, mrml<br> '''Size:''' 15.9MB <br>'''Acquisition Modality:''' MRI<br>'''Description:''' The Slicer3VisualizationDataset contains two MR scans of the brain, a pre-computed labelmap and 3D reconstructions of the anatomy.
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|[[File:EMSegmentationTutorial.PNG|200px|center|link=http://www.slicer.org/slicerWiki/images/9/91/AutomaticSegmentation.zip]]
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|style="background:LightGrey; color:Black; font-size:100%" align="Left"| <span id="1.1"></span>'''Automatic Segmentation'''<br>
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'''Data Type:''' nhdr, mrml<br> '''Size:''' 23MB <br>'''Acquisition Modality:''' MRI<br>'''Description:''' This dataset contains an MR scan of the brain and 3D reconstructions of the anatomy.
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|[[File:NeurosurgicalPlanningOverview.png|200px|center|link=http://www.slicer.org/slicerWiki/images/3/30/NeurosurgicalPlanningTutorialData.zip]]
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|style="background:LightGrey; color:Black; font-size:100%" align="Left"| <span id="1.1"></span>'''Neurosurigcal Planning'''<br>
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'''Data Type:''' ima, nrrd, nhdr, mrml, vtk<br> '''Size:''' 31.2MB <br>'''Acquisition Modality:''' MRI<br>'''Description:''' This dataset contains an MR and DTI scans of the brain and 3D reconstructions of the anatomy.
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|[[File:Cc.PNG|200px|center|link=http://www.slicer.org/slicerWiki/images/c/cf/DiffusionDataset.zip]]
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|style="background:LightGrey; color:Black; font-size:100%" align="Left"| <span id="1.1"></span>'''Diffusion Dataset'''<br>
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'''Data Type:''' nhdr<br> '''Size:''' 23MB <br>'''Acquisition Modality:''' MRI<br>'''Description:''' This dataset contains brain diffusion MR data.
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|[[File:ChangeTracker Analysis.png|200px|center|link=http://www.slicer.org/slicerWiki/images/4/4d/Slicer3.4.1-ChangeTrackerTutorial.pdf]]
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|style="background:LightGrey; color:Black; font-size:100%" align="Left"| <span id="1.1"></span>'''Change Tracker'''<br>
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'''Data Type:''' mrml, nrrd<br> '''Size:''' ~11MB <br>'''Acquisition Modality:''' MRI<br>'''Description:''' This dataset contains 2 longitudinal MR scans of the brain.
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|[[File:LiverSegmentation.png|200px|center|link=http://www.slicer.org/slicerWiki/images/7/73/LiverData_RSNA2009.tar.gz]]
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|style="background:LightGrey; color:Black; font-size:100%" align="Left"| <span id="1.1"></span>'''Liver Segmentation'''<br>
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'''Data Type:''' dicom, mrml, nrrd, vtk<br> '''Size:''' 33.1MB <br>'''Acquisition Modality:''' CT<br>'''Description:''' This dataset contains abdominal CT data, precomputed label map and 3D reconstruction of the liver.
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Latest revision as of 17:25, 5 August 2011

Home < TrainingDataGallery

NA-MIC Training Portal

NA-MIC Training Gallery (under construction)

This page is a gallery of the training datasets available to work with Slicer3. -->Suggested attributes; Snapshots, Data Type, Size and Acquisition modality.

3minute small.jpg
 Slicer 3 Minute

Data Type: nrrd, vtk, mrml
Size: 15.9MB
Acquisition Modality: MRI
Description: This dataset contains an MR scan of the brain and 3D reconstructions of the anatomy.

Manreg.png
 Manual Registration

Data Type: nrrd, mrml
Size: 14.6MB
Acquisition Modality: MRI
Description: This dataset contains two brain MRI of a single subject.

ProgrammingCourse Logo.PNG
 Programming in Slicer3

Data Type: nhdr, xml, txt
Size: 6.4MB
Acquisition Modality: MRI
Description:This contains an MR scan of the brain and pre-computed xml and C++ files for integrating the Hello World plug-in to Slicer3.

FreeSurferSlicerModule.png
 3D Visualization of Freesurfer Data

Data Type: mgz
Size: 221MB
Acquisition Modality: MRI
Description:The FreeSurfer dataset contains an MR scan of the brain and pre-computed FreeSurfer segmentation and cortical surface reconstructions.

DataLoadingAndVisualization SPujol.png
 Slicer3 Visualization

Data Type: nrrd, vtk, mrml
Size: 15.9MB
Acquisition Modality: MRI
Description: The Slicer3VisualizationDataset contains two MR scans of the brain, a pre-computed labelmap and 3D reconstructions of the anatomy.

EMSegmentationTutorial.PNG
 Automatic Segmentation

Data Type: nhdr, mrml
Size: 23MB
Acquisition Modality: MRI
Description: This dataset contains an MR scan of the brain and 3D reconstructions of the anatomy.

NeurosurgicalPlanningOverview.png
 Neurosurigcal Planning

Data Type: ima, nrrd, nhdr, mrml, vtk
Size: 31.2MB
Acquisition Modality: MRI
Description: This dataset contains an MR and DTI scans of the brain and 3D reconstructions of the anatomy.

Cc.PNG
 Diffusion Dataset

Data Type: nhdr
Size: 23MB
Acquisition Modality: MRI
Description: This dataset contains brain diffusion MR data.

ChangeTracker Analysis.png
 Change Tracker

Data Type: mrml, nrrd
Size: ~11MB
Acquisition Modality: MRI
Description: This dataset contains 2 longitudinal MR scans of the brain.

LiverSegmentation.png
 Liver Segmentation

Data Type: dicom, mrml, nrrd, vtk
Size: 33.1MB
Acquisition Modality: CT
Description: This dataset contains abdominal CT data, precomputed label map and 3D reconstruction of the liver.

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