Difference between revisions of "Projects:RegistrationDocumentation:Developer4"
From NAMIC Wiki
(Created page with '= Slicer 4: general GUI = *"flicker bug": when moving cursor out of FOV, the app locks up for seconds to minutes displaying "flicker" in the magnifying view. Presumably a gamma p…') |
|||
| (7 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
= Slicer 4: general GUI = | = Slicer 4: general GUI = | ||
| − | *"flicker bug": when moving cursor out of FOV, the app locks up for seconds to minutes displaying "flicker" in the magnifying view. | + | *"flicker bug": when moving cursor out of FOV, the app locks up for seconds to minutes displaying "flicker" in the magnifying view. -> known & reported in Mantis |
| − | *GUI: does not highlight bottom parts of pulldown menu (e.g. rename volume). Very non-intuitive behavior that makes it difficult for the user to know what was actually selected from the menu. | + | *GUI: does not highlight bottom parts of pulldown menu (e.g. rename volume). Very non-intuitive behavior that makes it difficult for the user to know what was actually selected from the menu. -> known & reported in Mantis |
| − | *Data module: MRML viewpanel really needs to be bigger and resizable! Very cumbersome to navigate once more than 4 pieces of data are loaded. | + | *Data module: MRML viewpanel really needs to be bigger and resizable! Very cumbersome to navigate once more than 4 pieces of data are loaded. -> known & reported in Mantis |
= Slicer 4: Registration modules= | = Slicer 4: Registration modules= | ||
| − | *move old versions to a "Legacy" menu: Fast Rigid, Fast Affine, Fast NonrigidBSpline | + | *move old versions to a "Legacy" menu: Fast Rigid, Fast Affine, Fast NonrigidBSpline -> done. |
| − | *cannot yet test ''ACPC'' module and ''Fiducial Registration'' module, since main "Fiducials" menu is not yet avail. | + | *cannot yet test ''ACPC'' module and ''Fiducial Registration'' module, since main "Fiducials" menu is not yet avail. -> fiducials are now under "Annotations" |
*crash when moving volumes in MRML tree | *crash when moving volumes in MRML tree | ||
*crash when adjusting slice views | *crash when adjusting slice views | ||
| − | *BRAINSfit not yet implemented | + | *BRAINSfit not yet implemented -> plan to implement as statically compiled module, using ITK4 beta. See RSNA devel. plan: [http://www.na-mic.org/Wiki/index.php/Events:Slicer4-Review-07-2011#RSNA_2011_Targeted_Objectives] |
*Main functionality testing: | *Main functionality testing: | ||
**fast affine: ok | **fast affine: ok | ||
**fast rigid: ok | **fast rigid: ok | ||
**fast BSpline: ok | **fast BSpline: ok | ||
| − | **expert auto: "Apply" button does not dim when clicked & reg. is running | + | **expert auto: |
| + | *** "Apply" button does not dim when clicked & reg. is running -> known & reported in Mantis | ||
***progress bars not functional | ***progress bars not functional | ||
***Expert Auto Rigid: ok | ***Expert Auto Rigid: ok | ||
| Line 21: | Line 22: | ||
***Expert Auto BSpline: | ***Expert Auto BSpline: | ||
***Expert Auto PipelineBSpline: | ***Expert Auto PipelineBSpline: | ||
| + | = Slicer 4 Registration Demo Case for RSNA = | ||
| + | *[http://www.na-mic.org/Wiki/index.php/RSNA2011_Planning RSNA Demo page] | ||
| + | *Suggested cases: | ||
| + | **[[Projects:RegistrationLibrary:RegLib_C06| Case 06: Breast Cancer MRI]]: impressive if successful, but narrow parameter range for success, old BSpline seems to work better than BRAINSfit | ||
| + | **[[Projects:RegistrationLibrary:RegLib_C31| Case 31: TBI]]: very strong pre-post differences. Complex dataset. Difficult to define best DOF so as not to register away differences of interest. | ||
| + | **[[Projects:RegistrationLibrary:RegLib_C36| Case 36: Head & Neck Cancer CT]]: straightforward, good result, but inter-subject | ||
| + | **[[Projects:RegistrationLibrary:RegLib_C42| Case 42: Infant Brain MRI]]: Difficult to define best DOF so as not to register away differences of interest. | ||
Latest revision as of 13:26, 31 August 2011
Home < Projects:RegistrationDocumentation:Developer4Slicer 4: general GUI
- "flicker bug": when moving cursor out of FOV, the app locks up for seconds to minutes displaying "flicker" in the magnifying view. -> known & reported in Mantis
- GUI: does not highlight bottom parts of pulldown menu (e.g. rename volume). Very non-intuitive behavior that makes it difficult for the user to know what was actually selected from the menu. -> known & reported in Mantis
- Data module: MRML viewpanel really needs to be bigger and resizable! Very cumbersome to navigate once more than 4 pieces of data are loaded. -> known & reported in Mantis
Slicer 4: Registration modules
- move old versions to a "Legacy" menu: Fast Rigid, Fast Affine, Fast NonrigidBSpline -> done.
- cannot yet test ACPC module and Fiducial Registration module, since main "Fiducials" menu is not yet avail. -> fiducials are now under "Annotations"
- crash when moving volumes in MRML tree
- crash when adjusting slice views
- BRAINSfit not yet implemented -> plan to implement as statically compiled module, using ITK4 beta. See RSNA devel. plan: [1]
- Main functionality testing:
- fast affine: ok
- fast rigid: ok
- fast BSpline: ok
- expert auto:
- "Apply" button does not dim when clicked & reg. is running -> known & reported in Mantis
- progress bars not functional
- Expert Auto Rigid: ok
- Expert Auto Affine: ok
- Expert Auto PipelineRigid:
- Expert Auto PipelineAffine:
- Expert Auto BSpline:
- Expert Auto PipelineBSpline:
Slicer 4 Registration Demo Case for RSNA
- RSNA Demo page
- Suggested cases:
- Case 06: Breast Cancer MRI: impressive if successful, but narrow parameter range for success, old BSpline seems to work better than BRAINSfit
- Case 31: TBI: very strong pre-post differences. Complex dataset. Difficult to define best DOF so as not to register away differences of interest.
- Case 36: Head & Neck Cancer CT: straightforward, good result, but inter-subject
- Case 42: Infant Brain MRI: Difficult to define best DOF so as not to register away differences of interest.
