Slicer4 Diffusion tutorial

Feb.14 Diffusion meeting - Sonia's reports on the DTI modules of the current Slicer4 release:

• Mantis Bug Reports:
  • Brain Mask (assigned to Demian)
  • Color by Orientation (assigned to Demian)
  • Glyphs Visualization (assigned to Alex, fixed)
  • Fiducials Seeding (assigned to Alex)
  • Consistency of the GUI in the labelmap and fiducial seeding modules (assigned to Alex)
  • Scalar Measurement computation issue (Planar measure) : wrong window and level values in the Volumes module ( assigned to Julien Finet) iss due to extreme values in the data - can this be clamped in the scalar estimation module?
  • Scalar measurement update issue]

• Suggested Reorganization of the Diffusion menu (assigned to Demian)
  • Diffusion Data Conversion:
    • DICOM to Nrrd
    • DTIimport/export
  • DWI:
    • Brain Mask
    • Tensor Estimation
    • Denoising
  • DTI
    • Scalar Measurements
    • Tractography
    • Resample

• DicomToNrrdConverter should be DICOM To NRRD Converter, and make the parameters of the Output sections visible on the GUI (assigned to Demian)
• Slicer crashes when saving the DTI tutorial Scene on Mac (assigned to Steve)

• Tutorial dataset: Slicer4 DTI dataset
• Suggested dead-line March 12, 2012 ( preparation for the Iowa Workshop March 20-21)