Difference between revisions of "Slicer4 Diffusion tutorial"
From NAMIC Wiki
| (5 intermediate revisions by 2 users not shown) | |||
| Line 2: | Line 2: | ||
* Mantis Bug Reports: | * Mantis Bug Reports: | ||
| − | ** [http://www.na-mic.org/Bug/view.php?id=1722 Brain Mask] (assigned to Demian) | + | ** [http://www.na-mic.org/Bug/view.php?id=1722 Brain Mask] (assigned to Demian, checked it out. It seems that it is a limitation of the Otsu strategy in this case due to the lack of padding, probably we need a real brain extraction tool) |
| − | ** [http://www.na-mic.org/Bug/view.php?id=1679 Color by Orientation] (assigned to Demian) | + | ** [http://www.na-mic.org/Bug/view.php?id=1679 Color by Orientation] (assigned to Demian, fixed) |
| − | ** [http://www.na-mic.org/Bug/view.php?id=1678 Glyphs Visualization] (assigned to Alex) | + | ** [http://www.na-mic.org/Bug/view.php?id=1678 Glyphs Visualization] (assigned to Alex, fixed) |
| − | **[http://www.na-mic.org/Bug/view.php?id=1685 Fiducials Seeding ] (assigned to Alex) | + | **[http://www.na-mic.org/Bug/view.php?id=1685 Fiducials Seeding ] (assigned to Alex, fixed) |
| − | ** [http://www.na-mic.org/Bug/view.php?id=1684 Consistency of the GUI in the labelmap and fiducial seeding modules] (assigned to Alex) | + | ** [http://www.na-mic.org/Bug/view.php?id=1684 Consistency of the GUI in the labelmap and fiducial seeding modules] (assigned to Alex, fixed) |
| − | ** [http://www.na-mic.org/Bug/view.php?id=1724 Scalar Measurement computation issue (Planar measure)] : wrong window and level values in the Volumes module ( assigned to | + | ** [http://www.na-mic.org/Bug/view.php?id=1724 Scalar Measurement computation issue (Planar measure)] : wrong window and level values in the Volumes module (assigned to Demian, fixed) |
| − | ** [http://www.na-mic.org/Bug/view.php?id=1725 Scalar measurement update issue]] | + | ** [http://www.na-mic.org/Bug/view.php?id=1725 Scalar measurement update issue]] (fixed by Julien Finet) |
| − | * Suggested Reorganization of the Diffusion menu (assigned to Demian) | + | * Suggested Reorganization of the Diffusion menu (assigned to Demian, Done) |
**Diffusion Data Conversion: | **Diffusion Data Conversion: | ||
***DICOM to Nrrd | ***DICOM to Nrrd | ||
| Line 23: | Line 23: | ||
*** Resample | *** Resample | ||
| − | * DicomToNrrdConverter should be DICOM To NRRD Converter, and make the parameters of the Output sections visible on the GUI (assigned to Demian) | + | * DicomToNrrdConverter should be DICOM To NRRD Converter, and make the parameters of the Output sections visible on the GUI (assigned to Demian, done) |
* Slicer crashes when saving the DTI tutorial Scene on Mac (assigned to Steve) | * Slicer crashes when saving the DTI tutorial Scene on Mac (assigned to Steve) | ||
* Tutorial dataset: [[media:DiffusionMRI_tutorialData.zip| Slicer4 DTI dataset]] | * Tutorial dataset: [[media:DiffusionMRI_tutorialData.zip| Slicer4 DTI dataset]] | ||
* '''Suggested dead-line March 12, 2012''' ( preparation for the Iowa Workshop March 20-21) | * '''Suggested dead-line March 12, 2012''' ( preparation for the Iowa Workshop March 20-21) | ||
Latest revision as of 16:26, 12 March 2012
Home < Slicer4 Diffusion tutorialFeb.14 Diffusion meeting - Sonia's reports on the DTI modules of the current Slicer4 release:
- Mantis Bug Reports:
- Brain Mask (assigned to Demian, checked it out. It seems that it is a limitation of the Otsu strategy in this case due to the lack of padding, probably we need a real brain extraction tool)
- Color by Orientation (assigned to Demian, fixed)
- Glyphs Visualization (assigned to Alex, fixed)
- Fiducials Seeding (assigned to Alex, fixed)
- Consistency of the GUI in the labelmap and fiducial seeding modules (assigned to Alex, fixed)
- Scalar Measurement computation issue (Planar measure) : wrong window and level values in the Volumes module (assigned to Demian, fixed)
- Scalar measurement update issue] (fixed by Julien Finet)
- Suggested Reorganization of the Diffusion menu (assigned to Demian, Done)
- Diffusion Data Conversion:
- DICOM to Nrrd
- DTIimport/export
- DWI:
- Brain Mask
- Tensor Estimation
- Denoising
- DTI
- Scalar Measurements
- Tractography
- Resample
- Diffusion Data Conversion:
- DicomToNrrdConverter should be DICOM To NRRD Converter, and make the parameters of the Output sections visible on the GUI (assigned to Demian, done)
- Slicer crashes when saving the DTI tutorial Scene on Mac (assigned to Steve)
- Tutorial dataset: Slicer4 DTI dataset
- Suggested dead-line March 12, 2012 ( preparation for the Iowa Workshop March 20-21)
