2012 Summer Project Week:NiftyReg

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  Projects List

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  Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.

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  Regression of FA data; solid line represents the mean and dotted lines the standard deviation.

Instructions for Use of this Template

1. Please create a new wiki page with an appropriate title for your project using the convention 2012_Winter_Project_Week:<Project Name>
2. Copy the entire text of this page into the page created above
3. Link the created page into the list of projects for the project event
4. Delete this section from the created page
5. Send an email to tkapur at bwh.harvard.edu if you are stuck

Key Investigators

• University College London: Marc Modat
• BWH: Sonia Pujol

Objective

NiftyReg is an open-source package for rigid, affine and non-linear registration developed the team of Dr. Sebastien Ourselin at the Centre for Medical Imaging Computing, University College London, UK. The objective is to make NiftyReg available in Slicer.

Approach, Plan

Our approach is to develop a CLI module for NiftyReg in Slicer4.

Progress

Delivery Mechanism

This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)

1. ITK Module
2. Slicer Module -
   1. Built-in -
   2. Extension -- commandline YES
   3. Extension -- loadable
3. Other (Please specify)

References

• Modat et al. Fast free-form deformation using graphics processing units. Comput Meth Prog Bio (2010) vol. 98 (3) pp. 278-84
• Daga et al. Accurate Localisation of Optic Radiation during Neurosurgery in an Interventional MRI Suite. IEEE Transactions on Medical Imaging (2012)
• Modat. Parametric non-rigid registration using a stationary velocity field. Mathematical Methods in Biomedical Image Analysis (MMBIA), 2012 IEEE Workshop on (2012) pp. 145 - 150