Difference between revisions of "2012 Summer Project Week:PlastimatchIntegration"

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Image:PW-MIT2012.png|[[2012_Summer_Project_Week#Projects|Projects List]]
 
Image:PW-MIT2012.png|[[2012_Summer_Project_Week#Projects|Projects List]]
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Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
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Image:Plastimatch_clp_bspline_gui_2012.png|Current command line interface
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Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.
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Image:Plastimatch_loadable_bspline_gui_2012.png|New loadable module interface
 
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==Instructions for Use of this Template==
 
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#Please create a new wiki page with an appropriate title for your project using the convention 2012_Winter_Project_Week:<Project Name>
 
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#Copy the entire text of this page into the page created above
 
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#Link the created page into the list of projects for the project event
 
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#Delete this section from the created page
 
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#Send an email to tkapur at bwh.harvard.edu if you are stuck
 
  
 
==Key Investigators==
 
==Key Investigators==
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* UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig
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* MGH: James Shackleford, Greg Sharp
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* Utah: Tom Fletcher, Ross Whitaker
 
  
 
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<h3>Objective</h3>
 
<h3>Objective</h3>
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We are developing methods for analyzing diffusion tensor data along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison.
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The goal is to improve interactivity of plastimatch extensions to 3D Slicer by transitioning from CLP to loadable module.
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<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
  
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Our approach for analyzing diffusion tensors is summarized in the IPMI 2007 reference below.  The main challenge to this approach is <foo>.
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We already have a loadable module framework which compiles and runs.  The next steps will be to design the GUI and
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then call appropriate plastimatch functions.
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Our plan for the project week is to first try out <bar>,...
 
  
 
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<h3>Progress</h3>
 
<h3>Progress</h3>
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Software for the fiber tracking and statistical analysis along the tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part of the [[NA-MIC/Projects/Diffusion_Image_Analysis/DTI_Software_and_Algorithm_Infrastructure|DTI Software Infrastructure]] project. The methods have been validated on a repeated scan of a healthy individual. This work has been published as a conference paper (MICCAI 2005) and a journal version (MEDIA 2006). Our recent IPMI 2007 paper includes a nonparametric regression method for analyzing data along a fiber tract.
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A first version of the GUI has been designed and implemented. Significant work has been performed on the loadable module framework towards tighter integration with the MRML tree.
  
  
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==Delivery Mechanism==
 
==Delivery Mechanism==
  
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This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)
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This work will be delivered to the NA-MIC Kit as a
  
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#ITK Module
 
 
#Slicer Module
 
#Slicer Module
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##Built-in
 
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##Extension -- commandline
 
 
##Extension -- loadable
 
##Extension -- loadable
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#Other (Please specify)
 
  
 
==References==
 
==References==
 
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Latest revision as of 07:47, 22 June 2012

Home < 2012 Summer Project Week:PlastimatchIntegration

  • Current command line interface

  • New loadable module interface

Key Investigators

  • MGH: James Shackleford, Greg Sharp

Objective

The goal is to improve interactivity of plastimatch extensions to 3D Slicer by transitioning from CLP to loadable module.

Approach, Plan

We already have a loadable module framework which compiles and runs. The next steps will be to design the GUI and then call appropriate plastimatch functions.

Progress

A first version of the GUI has been designed and implemented. Significant work has been performed on the loadable module framework towards tighter integration with the MRML tree.


Delivery Mechanism

This work will be delivered to the NA-MIC Kit as a

  1. Slicer Module
    1. Extension -- loadable

References

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