Difference between revisions of "RSNA2012 Planning"
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− | !Nb !!DEMO !! Datasets !! Notes !! Tools !! Slicer Modules | + | !Nb !!DEMO !! Datasets !! Notes !! Tools !! Slicer Modules !! Developer !! Clinical Expert |
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||0 ||3D Visualization of DICOM images for Radiology Applications || [http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Training#Slicer4_3D_Visualization_of_DICOM_images_for_Radiology_Applications RSNA datasets] || [http://www.slicer.org/slicerWiki/images/e/e0/3DVisualizationDICOMforRadiologyApplications_SoniaPujol_KittShaffer_RSNA2011.pdf 3D Visualization for Radiology Applications] | ||0 ||3D Visualization of DICOM images for Radiology Applications || [http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Training#Slicer4_3D_Visualization_of_DICOM_images_for_Radiology_Applications RSNA datasets] || [http://www.slicer.org/slicerWiki/images/e/e0/3DVisualizationDICOMforRadiologyApplications_SoniaPujol_KittShaffer_RSNA2011.pdf 3D Visualization for Radiology Applications] | ||
− | || Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking || Data, Volumes, Models, Scene Views | + | || Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking || Data, Volumes, Models, Scene Views || TBD || TBD |
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− | ||1 ||Data Loading and Visualization || [http://www.slicer.org/slicerWiki/images/6/61/Slicer3VisualizationDataset.zip Slicer3Visualization Data] || [http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Training#Slicer4_Data_Loading_and_3D_Visualization Slicer4Visualization Tutorial]|| Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking (?) || Data, Volumes, Models, Scene Views | + | ||1 ||Data Loading and Visualization || [http://www.slicer.org/slicerWiki/images/6/61/Slicer3VisualizationDataset.zip Slicer3Visualization Data] || [http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Training#Slicer4_Data_Loading_and_3D_Visualization Slicer4Visualization Tutorial]|| Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking (?) || Data, Volumes, Models, Scene Views || TBD || TBD |
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− | ||2||MRI-based topographic parcellation of human brain || [[Media:RSNA2010_EMS.zip | EM Segmenter Data]] || registration, segmentation [http://www.slicer.org/slicerWiki/index.php/EMSegmenter-Tasks EMSegmenter Tasks] || EM Segmenter || EMSegmenter | + | ||2||MRI-based topographic parcellation of human brain || [[Media:RSNA2010_EMS.zip | EM Segmenter Data]] || registration, segmentation [http://www.slicer.org/slicerWiki/index.php/EMSegmenter-Tasks EMSegmenter Tasks] || EM Segmenter || EMSegmenter || TBD || TBD |
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− | ||3|| Volume Rendering #1 Head || [[Media:RSNA2010_OsirixManixDataset.zip | Head CT Scan (Osirix Manix Dataset)]] || show cropping, transfer functions, GPU, slice composite view, Annotations || Volume Rendering and Annotations || Volume Rendering, Annotations, Scene Views | + | ||3|| Volume Rendering #1 Head || [[Media:RSNA2010_OsirixManixDataset.zip | Head CT Scan (Osirix Manix Dataset)]] || show cropping, transfer functions, GPU, slice composite view, Annotations || Volume Rendering and Annotations || Volume Rendering, Annotations, Scene Views || TBD || TBD |
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− | ||4|| Volume Rendering #2 Abdomen|| [[Media:RSNA2010_OsirixPanoramixDataset.zip | Abdominal CT scan with AAA (Osirix Panoramix Dataset)]] || show cropping, transfer functions, GPU, slice composite view, Annotations || Volume Rendering and Annotations || Volume Rendering, Annotations, Scene Views | + | ||4|| Volume Rendering #2 Abdomen|| [[Media:RSNA2010_OsirixPanoramixDataset.zip | Abdominal CT scan with AAA (Osirix Panoramix Dataset)]] || show cropping, transfer functions, GPU, slice composite view, Annotations || Volume Rendering and Annotations || Volume Rendering, Annotations, Scene Views || TBD || TBD |
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− | ||5|| Volume Rendering #3 Thorax|| [[Media:RSNA2010_Lungs_Dataset.zip | Thoracic CT scan]] || show cropping, transfer functions, GPU, slice composite view, Annotations || Volume Rendering and Annotations || Volume Rendering, Annotations, Scene Views | + | ||5|| Volume Rendering #3 Thorax|| [[Media:RSNA2010_Lungs_Dataset.zip | Thoracic CT scan]] || show cropping, transfer functions, GPU, slice composite view, Annotations || Volume Rendering and Annotations || Volume Rendering, Annotations, Scene Views || TBD || TBD |
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− | ||6|| Traumatic Brain Injury Case Analysis || [[Media:TBI-DemoScene-RSNA2011.zip | TBI Demo Data (UCLA)]] || [http://wiki.na-mic.org/Wiki/index.php/File:TBISegmentation_TutorialContestSummer2011.pdf TBI tutorial] || ABC Segmentation, Model Maker, Editor, Annotations || Data, ABC Segmentation, Model Maker, Editor, Annotations, Scene Views | + | ||6|| Traumatic Brain Injury Case Analysis || [[Media:TBI-DemoScene-RSNA2011.zip | TBI Demo Data (UCLA)]] || [http://wiki.na-mic.org/Wiki/index.php/File:TBISegmentation_TutorialContestSummer2011.pdf TBI tutorial] || ABC Segmentation, Model Maker, Editor, Annotations || Data, ABC Segmentation, Model Maker, Editor, Annotations, Scene Views || TBD || TBD |
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− | ||7|| Radiotherapy || [http://forge.abcd.harvard.edu/gf/download/frsrelease/85/1828/popi-plan.tar.gz Plastimatch Dose Warping Data (MGH)] || [http://www.na-mic.org/Wiki/index.php/File:PlastimatchDose_TutorialContestSummer2012.pdf Plastimatch Tutorial] || Plastimatch, DVH extension (Csaba) || Data, Plastimatch Extension: DICOM/DICOM-RT Import, DICOM/DICOM-RT Export, B-Spine Deformable Registration,XFORMWARP Warping with transform Transforms, | + | ||7|| Radiotherapy || [http://forge.abcd.harvard.edu/gf/download/frsrelease/85/1828/popi-plan.tar.gz Plastimatch Dose Warping Data (MGH)] || [http://www.na-mic.org/Wiki/index.php/File:PlastimatchDose_TutorialContestSummer2012.pdf Plastimatch Tutorial] || Plastimatch, DVH extension (Csaba) || Data, Plastimatch Extension: DICOM/DICOM-RT Import, DICOM/DICOM-RT Export, B-Spine Deformable Registration,XFORMWARP Warping with transform Transforms, || TBD || TBD |
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− | ||8|| White matter exploration for neurosurgical planning || [[media:WhiteMatterExplorationData.zip| White Matter Exploration dataset]] || [http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Training#Slicer4_Neurosurgical_Planning_Tutorial Neurosurgical planning Tutorial]] || Diffusion ( Estimation, Tractography, Fiducial Seeding), Editor, Model Maker || Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display | + | ||8|| White matter exploration for neurosurgical planning || [[media:WhiteMatterExplorationData.zip| White Matter Exploration dataset]] || [http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Training#Slicer4_Neurosurgical_Planning_Tutorial Neurosurgical planning Tutorial]] || Diffusion ( Estimation, Tractography, Fiducial Seeding), Editor, Model Maker || Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display || TBD || TBD |
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− | ||9|| Longitudinal analysis of meningioma growth|| Change Tracker Data are part of the tutorial || [http://www.slicer.org/slicerWiki/images/c/c6/Slicer4QuantitativeImaging.pdf Quantitative Imaging Tutorial] || Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit || Change Tracker, Volume Rendering, BRAINSFit, CropVolume | + | ||9|| Longitudinal analysis of meningioma growth|| Change Tracker Data are part of the tutorial || [http://www.slicer.org/slicerWiki/images/c/c6/Slicer4QuantitativeImaging.pdf Quantitative Imaging Tutorial] || Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit || Change Tracker, Volume Rendering, BRAINSFit, CropVolume || TBD || TBD |
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− | ||10||Image-guided prostate interventions || [[media:RSNA2011_Prostate.zip | Prostate Data updated for Slicer4, in progress]] ''Can load RSNA2010 demo scene, mostly working, see [http://www.na-mic.org/Bug/view.php?id=1523]''|| Pre-op/Intra-op registration; [http://www.na-mic.org/Wiki/index.php/Slicer4:Prostate_mpMRI_review_use_case Use Case Demo] [[media:RSNA2010_Prostate.zip | Prostate Data]] || Linked Viewing || Annotations, Models, Crosshairs, CompareViews | + | ||10||Image-guided prostate interventions || [[media:RSNA2011_Prostate.zip | Prostate Data updated for Slicer4, in progress]] ''Can load RSNA2010 demo scene, mostly working, see [http://www.na-mic.org/Bug/view.php?id=1523]''|| Pre-op/Intra-op registration; [http://www.na-mic.org/Wiki/index.php/Slicer4:Prostate_mpMRI_review_use_case Use Case Demo] [[media:RSNA2010_Prostate.zip | Prostate Data]] || Linked Viewing || Annotations, Models, Crosshairs, CompareViews || TBD || TBD |
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− | ||11|| Brain Atlas || [http://www.na-mic.org/publications/item/view/2037 NAC Multi-modality MRI-based Atlas of the Brain] || Work in progress - atlases are being updated|| Linked Viewing || Data, Volumes, Models, Scene Views | + | ||11|| Brain Atlas || [http://www.na-mic.org/publications/item/view/2037 NAC Multi-modality MRI-based Atlas of the Brain] || Work in progress - atlases are being updated|| Linked Viewing || Data, Volumes, Models, Scene Views || TBD || TBD |
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− | ||12|| Abdomen Atlas|| [http://www.slicer.org/publications/item/view/1953 Knee Atlas] || Work in progress - atlases are being updated|| Linked Viewing || Data, Volumes, Models, Scene Views | + | ||12|| Abdomen Atlas|| [http://www.slicer.org/publications/item/view/1953 Knee Atlas] || Work in progress - atlases are being updated|| Linked Viewing || Data, Volumes, Models, Scene Views || TBD || TBD |
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− | ||13|| Knee Atlas Atlas || [http://www.slicer.org/publications/item/view/1918 Abdominal Atlas]|| Work in progress - atlases are being updated|| Linked Viewing || Data, Volumes, Models, Scene Views | + | ||13|| Knee Atlas Atlas || [http://www.slicer.org/publications/item/view/1918 Abdominal Atlas]|| Work in progress - atlases are being updated|| Linked Viewing || Data, Volumes, Models, Scene Views || TBD || TBD |
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== List of Slicer Modules involved in RSNA tutorials & demos== | == List of Slicer Modules involved in RSNA tutorials & demos== |
Revision as of 20:28, 11 September 2012
Home < RSNA2012 PlanningRSNA hands-on courses
Nb | Tutorial slides | Datasets | Tools | Slicer Modules |
---|---|---|---|---|
Classroom Course 1 - ICIA32, Nov.27, 12:30-2:00 pm | 3D Visualization of DICOM Data for Radiology Applications | I ICIA 32 dataset | Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking | Data, Volumes, Models, Scene Views + DICOM ( note: the DICOM part will be a new addition to the slides) |
Classroom Course 2 - ICIA11, Nov.25, 11:00-12:30 pm | Quantitative Imaging Tutorial | ICIA 11 datasets: PETCTFusion and Change Tracker | Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit | Change Tracker, Volume Rendering, BRAINSFit, CropVolume} |
Quantitative Imaging Reading Room
Tentative list of demonstrations for the RSNA 2012 Slicer booth. Needs further development and testing Note: RSNA demo machines will need nvidia graphics cards to get GPU Volume Rendering
Nb | DEMO | Datasets | Notes | Tools | Slicer Modules | Developer | Clinical Expert |
---|---|---|---|---|---|---|---|
0 | 3D Visualization of DICOM images for Radiology Applications | RSNA datasets | 3D Visualization for Radiology Applications | Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking | Data, Volumes, Models, Scene Views | TBD | TBD |
1 | Data Loading and Visualization | Slicer3Visualization Data | Slicer4Visualization Tutorial | Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking (?) | Data, Volumes, Models, Scene Views | TBD | TBD |
2 | MRI-based topographic parcellation of human brain | EM Segmenter Data | registration, segmentation EMSegmenter Tasks | EM Segmenter | EMSegmenter | TBD | TBD |
3 | Volume Rendering #1 Head | Head CT Scan (Osirix Manix Dataset) | show cropping, transfer functions, GPU, slice composite view, Annotations | Volume Rendering and Annotations | Volume Rendering, Annotations, Scene Views | TBD | TBD |
4 | Volume Rendering #2 Abdomen | Abdominal CT scan with AAA (Osirix Panoramix Dataset) | show cropping, transfer functions, GPU, slice composite view, Annotations | Volume Rendering and Annotations | Volume Rendering, Annotations, Scene Views | TBD | TBD |
5 | Volume Rendering #3 Thorax | Thoracic CT scan | show cropping, transfer functions, GPU, slice composite view, Annotations | Volume Rendering and Annotations | Volume Rendering, Annotations, Scene Views | TBD | TBD |
6 | Traumatic Brain Injury Case Analysis | TBI Demo Data (UCLA) | TBI tutorial | ABC Segmentation, Model Maker, Editor, Annotations | Data, ABC Segmentation, Model Maker, Editor, Annotations, Scene Views | TBD | TBD |
7 | Radiotherapy | Plastimatch Dose Warping Data (MGH) | Plastimatch Tutorial | Plastimatch, DVH extension (Csaba) | Data, Plastimatch Extension: DICOM/DICOM-RT Import, DICOM/DICOM-RT Export, B-Spine Deformable Registration,XFORMWARP Warping with transform Transforms, | TBD | TBD |
8 | White matter exploration for neurosurgical planning | White Matter Exploration dataset | Neurosurgical planning Tutorial] | Diffusion ( Estimation, Tractography, Fiducial Seeding), Editor, Model Maker | Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display | TBD | TBD |
9 | Longitudinal analysis of meningioma growth | Change Tracker Data are part of the tutorial | Quantitative Imaging Tutorial | Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit | Change Tracker, Volume Rendering, BRAINSFit, CropVolume | TBD | TBD |
10 | Image-guided prostate interventions | Prostate Data updated for Slicer4, in progress Can load RSNA2010 demo scene, mostly working, see [1] | Pre-op/Intra-op registration; Use Case Demo Prostate Data | Linked Viewing | Annotations, Models, Crosshairs, CompareViews | TBD | TBD |
11 | Brain Atlas | NAC Multi-modality MRI-based Atlas of the Brain | Work in progress - atlases are being updated | Linked Viewing | Data, Volumes, Models, Scene Views | TBD | TBD |
12 | Abdomen Atlas | Knee Atlas | Work in progress - atlases are being updated | Linked Viewing | Data, Volumes, Models, Scene Views | TBD | TBD |
13 | Knee Atlas Atlas | Abdominal Atlas | Work in progress - atlases are being updated | Linked Viewing | Data, Volumes, Models, Scene Views | TBD | TBD |
List of Slicer Modules involved in RSNA tutorials & demos
- Data
- Welcome to Slicer
- Volumes
- Models
- Scene Views
- Annotations
- Volume Rendering
- Editor
- Model Maker
- Diffusion Tensor Estimation
- Diffusion Tensor Scalar Measurements
- Tractography Labelmap Seeding
- Tractography Fiducial Seeding
- Tractography Display
- BRAINSTools
- Change Tracker
- CropVolume
- Extensions:
- ABC
- Plastimatch
- EMSegmenter
- Skull Stripper
- Reporting
- Documentation: We need all core modules reasonably well documented.