Difference between revisions of "NAMIC Wiki:Interactive Cut"
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| + | __NOTOC__ | ||
| + | <gallery> | ||
| + | Image:PW-SLC2013.png|[[2013_Summer_Project_Week#Projects|Projects List]] | ||
| + | </gallery> | ||
| − | + | ==Key Investigators== | |
| + | |||
| + | Jan Egger, Tina Kapur, BWH | ||
| + | |||
| + | Steve Pieper, Isomics | ||
| + | |||
| + | ==Project Description== | ||
| + | |||
| + | <div style="margin: 20px;"> | ||
| + | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
| + | <h3>Objective</h3> | ||
| + | * To implement a graph-cut based interactive segmentation algorithm in Slicer | ||
| + | </div> | ||
| + | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
| + | <h3>Approach, Plan</h3> | ||
| + | * In this project, we want to realize an interactive graph-based segmentation approach in 3D Slicer that provides real-time feedback of the segmentation result to the user during the segmentation process. | ||
| + | </div> | ||
| + | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
| + | <h3>Progress</h3> | ||
| + | * To be filled out as we go. | ||
| + | </div> | ||
| + | </div> | ||
| + | |||
| + | ==References== | ||
| + | #Boykov Y., Kolmogorov V. [http://www.csd.uwo.ca/~yuri/Papers/pami04.pdf An Experimental Comparison of Min-Cut/Max-Flow Algorithms for Energy Minimization in Vision]. IEEE Transactions on PAMI, Vol. 26, No. 9, pp. 1124-1137, Sept. 2004. | ||
| + | #Schwarzenberg R. [http://wiki.na-mic.org/Wiki/images/7/7d/RobertSchwarzenberg_BachelorThesis.pdf Semi-Automatic, Graph-Based Vertebra Segmentation in MRI Data]. Bachelor Thesis, Department of Mathematics and Computer Science, University of Marburg, Germany, pp. 1-68, 2012. | ||
| + | |||
| + | === Publications Describing the Algorithms === | ||
| + | |||
| + | #Schwarzenberg R., Freisleben B., Kikinis R., Nimsky C., Egger J. [http://link.springer.com/chapter/10.1007%2F978-3-642-36480-8_14 A Cube-Based Approach to Segment Vertebrae in MRI-Acquisitions (in German)]. Proceedings of Bildverarbeitung für die Medizin (BVM), Heidelberg, Germany, Springer, pp. 69-74, 2013. | ||
| + | |||
| + | #Egger J., Freisleben B., Nimsky C., Kapur T. [http://www.nature.com/srep/2012/120524/srep00420/full/srep00420.html Template-Cut: A Pattern-Based Segmentation Paradigm]. Nature - Scientific Reports, Nature Publishing Group (NPG), 2(420), 2012. | ||
| + | #Egger J., Kapur T., Dukatz T., Kolodziej M., Zukić D., Freisleben B., Nimsky C. [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0031064 Square-Cut: A Segmentation Algorithm on the Basis of a Rectangle Shape]. PLoS One 7(2):e31064, 2012. | ||
| + | #Egger J., Colen R., Freisleben B., Nimsky C. [http://www.spl.harvard.edu/publications/item/view/2169 Manual Refinement System for Graph-based Segmentation Results in the Medical Domain]. J Med Syst., 36(5):2829-39, 2012. | ||
| + | #Egger J., Bauer M.H.A., Kuhnt D., Carl B., Kappus C., Freisleben B., Nimsky C. [http://www.springerlink.com/content/e466543l08k3wm76/ Nugget-Cut: A Segmentation Scheme for Spherically- and Elliptically-Shaped 3D Objects]. DAGM, LNCS 6376:383-392, Springer, 2010. | ||
| + | |||
| + | === External Libraries/Source Code === | ||
| + | [http://vision.csd.uwo.ca/code/ Max-flow/min-cut] | ||
Latest revision as of 18:25, 27 February 2013
Home < NAMIC Wiki:Interactive Cut
Key Investigators
Jan Egger, Tina Kapur, BWH
Steve Pieper, Isomics
Project Description
Objective
- To implement a graph-cut based interactive segmentation algorithm in Slicer
Approach, Plan
- In this project, we want to realize an interactive graph-based segmentation approach in 3D Slicer that provides real-time feedback of the segmentation result to the user during the segmentation process.
Progress
- To be filled out as we go.
References
- Boykov Y., Kolmogorov V. An Experimental Comparison of Min-Cut/Max-Flow Algorithms for Energy Minimization in Vision. IEEE Transactions on PAMI, Vol. 26, No. 9, pp. 1124-1137, Sept. 2004.
- Schwarzenberg R. Semi-Automatic, Graph-Based Vertebra Segmentation in MRI Data. Bachelor Thesis, Department of Mathematics and Computer Science, University of Marburg, Germany, pp. 1-68, 2012.
Publications Describing the Algorithms
- Schwarzenberg R., Freisleben B., Kikinis R., Nimsky C., Egger J. A Cube-Based Approach to Segment Vertebrae in MRI-Acquisitions (in German). Proceedings of Bildverarbeitung für die Medizin (BVM), Heidelberg, Germany, Springer, pp. 69-74, 2013.
- Egger J., Freisleben B., Nimsky C., Kapur T. Template-Cut: A Pattern-Based Segmentation Paradigm. Nature - Scientific Reports, Nature Publishing Group (NPG), 2(420), 2012.
- Egger J., Kapur T., Dukatz T., Kolodziej M., Zukić D., Freisleben B., Nimsky C. Square-Cut: A Segmentation Algorithm on the Basis of a Rectangle Shape. PLoS One 7(2):e31064, 2012.
- Egger J., Colen R., Freisleben B., Nimsky C. Manual Refinement System for Graph-based Segmentation Results in the Medical Domain. J Med Syst., 36(5):2829-39, 2012.
- Egger J., Bauer M.H.A., Kuhnt D., Carl B., Kappus C., Freisleben B., Nimsky C. Nugget-Cut: A Segmentation Scheme for Spherically- and Elliptically-Shaped 3D Objects. DAGM, LNCS 6376:383-392, Springer, 2010.
