Difference between revisions of "SDIWG:NCBC Software Classification NCIBI Examples"
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=== Michigan Molecular Interactions(MiMI)=== | === Michigan Molecular Interactions(MiMI)=== | ||
| − | * NCBC [http://bioontology.org/ontologies/SoftwareOntology/ Ontology Classification]<nowiki>: | + | * NCBC [http://bioontology.org/ontologies/SoftwareOntology/ Ontology Classification]<nowiki>: Biotool --> Data Management -->Information retrieval, traversal and querying </nowiki> |
| − | * Description: | + | * Description: MiMI gathers data from well-known protein interaction databases and merges the information. Since these datasets often contain contradictory information, the merge is performed in such a way that all information is retained. A provenance model has been developed that tracks where each piece of data came from, and what processes have been performed upon it. A simple yet powerful user interface aids users in their queries. Thus, MiMI allows scientists to query all data, whether corroborative, or contradictory, and specify which sources to utilize |
| − | * Data Input: | + | * Data Input: MQuery |
| − | * Data Output: | + | * Data Output: XML using MiMI's internal schema, PSI-MI format (version 2.5) and plain text |
| − | * Implementation Language: | + | * Implementation Language: Timber native XML database |
| − | * Platforms tested: | + | * Platforms tested: Web and Cytoscape Browsers |
| − | * | + | * Authors: Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip Andrews, Brian Athey, David States and H. V. Jagadish |
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Revision as of 21:36, 5 March 2007
Home < SDIWG:NCBC Software Classification NCIBI ExamplesBack to the Main NCBC Software Ontology and Classification Page
NCIBI Software Classification & Metadata Examples
Edgewarp
- NCBC Ontology Classification: Modeling --> Algorithms --> Image Processing --> Registration
- Description: Edgewarp 3D is a sophisticated workstation package for manipulation of 2D and 3D biomedical images and related data structures by a combination of landmark location, thin-plate spline, and image unwarping and averaging.
- Data Input: TBD
- Data Output: TBD
- Implementation Language: C and C++ code and makes extensive use of SGI's OpenGL graphics interface. Communication with the user is by textual and graphical interfaces managed using TCL/TK.
- Platforms tested: SGI/IRIX
- Version, Date, Stage: 3.2.7
- Authors: Fred Bookstein
- URL: http://vhp.med.umich.edu/edgewarpss.html
Michigan Molecular Interactions(MiMI)
- NCBC Ontology Classification: Biotool --> Data Management -->Information retrieval, traversal and querying
- Description: MiMI gathers data from well-known protein interaction databases and merges the information. Since these datasets often contain contradictory information, the merge is performed in such a way that all information is retained. A provenance model has been developed that tracks where each piece of data came from, and what processes have been performed upon it. A simple yet powerful user interface aids users in their queries. Thus, MiMI allows scientists to query all data, whether corroborative, or contradictory, and specify which sources to utilize
- Data Input: MQuery
- Data Output: XML using MiMI's internal schema, PSI-MI format (version 2.5) and plain text
- Implementation Language: Timber native XML database
- Platforms tested: Web and Cytoscape Browsers
- Authors: Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip Andrews, Brian Athey, David States and H. V. Jagadish
