Difference between revisions of "2013 Summer Project Week:SlicerIGT Extension"

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(Created page with '__NOTOC__ <gallery> Image:PW-MIT2012.png|Projects List <!-- Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the c…')
 
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* Make sure everything compiles on every platform.
 
* Make sure everything compiles on every platform.
 
* Every module has documentation, and some example use cases or tests.
 
* Every module has documentation, and some example use cases or tests.
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* Discuss how to present individual contribution and collaboration at the same time (maybe a meeting with Gabor and Noby).
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* Discuss how to present individual contribution and collaboration at the same time (meeting with PIs).
 
* Coordinate plans between groups.
 
* Coordinate plans between groups.
  
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<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
  
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Our approach for analyzing diffusion tensors is summarized in the IPMI 2007 reference below.  The main challenge to this approach is <foo>.
 
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Our plan for the project week is to first try out <bar>,...
 
  
 
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==References==
 
==References==
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* [[www.slicerigt.org]]
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* [www.slicerigt.org]
 
<!--
 
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*Fletcher P, Tao R, Jeong W, Whitaker R. [http://www.na-mic.org/publications/item/view/634 A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.] Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.
 
*Fletcher P, Tao R, Jeong W, Whitaker R. [http://www.na-mic.org/publications/item/view/634 A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.] Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.

Revision as of 15:16, 18 May 2013

Home < 2013 Summer Project Week:SlicerIGT Extension

  • Regression of FA data; solid line represents the mean and dotted lines the standard deviation. -->

Instructions for Use of this Template

  1. Please create a new wiki page with an appropriate title for your project using the convention 2012_Winter_Project_Week:<Project Name>
  2. Copy the entire text of this page into the page created above
  3. Link the created page into the list of projects for the project event
  4. Delete this section from the created page
  5. Send an email to tkapur at bwh.harvard.edu if you are stuck

Key Investigators

  • UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig
  • Utah: Tom Fletcher, Ross Whitaker

Objective

Consolidate the SlicerIGT extension.

  • Make sure everything compiles on every platform.
  • Every module has documentation, and some example use cases or tests.
  • Discuss how to present individual contribution and collaboration at the same time (meeting with PIs).
  • Coordinate plans between groups.

Approach, Plan


Progress

Software for the fiber tracking and statistical analysis along the tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part of the DTI Software Infrastructure project. The methods have been validated on a repeated scan of a healthy individual. This work has been published as a conference paper (MICCAI 2005) and a journal version (MEDIA 2006). Our recent IPMI 2007 paper includes a nonparametric regression method for analyzing data along a fiber tract.


Delivery Mechanism

This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)

  1. ITK Module
  2. Slicer Module
    1. Built-in
    2. Extension -- commandline
    3. Extension -- loadable
  3. Other (Please specify)

References

  • [www.slicerigt.org]
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