Difference between revisions of "SDIWG:NCBC Software Classification NCIBI Examples"
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== NCIBI Software Classification & Metadata Examples == | == NCIBI Software Classification & Metadata Examples == | ||
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| − | === Michigan Molecular Interactions | + | === MiMi:Michigan Molecular Interactions === |
| − | * NCBC [http://bioontology.org/ontologies/SoftwareOntology/ Ontology Classification]<nowiki>: | + | * NCBC [http://bioontology.org/ontologies/SoftwareOntology/ Ontology Classification]<nowiki>: Biotool --> Data Management -->Information retrieval, traversal and querying </nowiki> |
| − | * Description: | + | * Description: MiMI gathers data from well-known protein interaction databases and merges the information. Since these datasets often contain contradictory information, the merge is performed in such a way that all information is retained. A provenance model has been developed that tracks where each piece of data came from, and what processes have been performed upon it. A simple yet powerful user interface aids users in their queries. Thus, MiMI allows scientists to query all data, whether corroborative, or contradictory, and specify which sources to utilize |
| − | * Data Input: | + | * Data Input: MQuery |
| − | * Data Output: | + | * Data Output: XML using MiMI's internal schema, PSI-MI format (version 2.5) and plain text |
| − | * Implementation Language: | + | * Implementation Language: Timber native XML database |
| − | * Platforms tested: | + | * Platforms tested: Web and Cytoscape Browsers |
| − | * | + | * Authors: Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip Andrews, Brian Athey, David States and H. V. Jagadish |
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* URL: http://mimi.ncibi.org/MiMI/home.jsp | * URL: http://mimi.ncibi.org/MiMI/home.jsp | ||
| + | * Keywords: data integration, protein interactions | ||
Latest revision as of 18:22, 6 March 2007
Home < SDIWG:NCBC Software Classification NCIBI ExamplesBack to the Main NCBC Software Ontology and Classification Page
NCIBI Software Classification & Metadata Examples
MiMi:Michigan Molecular Interactions
- NCBC Ontology Classification: Biotool --> Data Management -->Information retrieval, traversal and querying
- Description: MiMI gathers data from well-known protein interaction databases and merges the information. Since these datasets often contain contradictory information, the merge is performed in such a way that all information is retained. A provenance model has been developed that tracks where each piece of data came from, and what processes have been performed upon it. A simple yet powerful user interface aids users in their queries. Thus, MiMI allows scientists to query all data, whether corroborative, or contradictory, and specify which sources to utilize
- Data Input: MQuery
- Data Output: XML using MiMI's internal schema, PSI-MI format (version 2.5) and plain text
- Implementation Language: Timber native XML database
- Platforms tested: Web and Cytoscape Browsers
- Authors: Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip Andrews, Brian Athey, David States and H. V. Jagadish
- URL: http://mimi.ncibi.org/MiMI/home.jsp
- Keywords: data integration, protein interactions
