Difference between revisions of "2013 Summer Project Week:SlicerIGT Extension"

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Image:PW-MIT2012.png|[[2012_Summer_Project_Week#Projects|Projects List]]
 
Image:PW-MIT2012.png|[[2012_Summer_Project_Week#Projects|Projects List]]
<!-- Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
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Image:SlicerIGTLogo.png|SlicerIGT extension logo.
Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation. -->
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<!-- Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation. -->
 
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<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
 
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* Collect typical use cases.
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* Create simulated environment to test use cases offline.
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* Develop documentation and tutorials.
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* Use the [http://www.na-mic.org/Wiki/index.php/2013_Project_Week_Breakout_Session:_IGT Thursday morning meeting ]
  
 
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<h3>Progress</h3>
 
<h3>Progress</h3>
Software for the fiber tracking and statistical analysis along the tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part of the [[NA-MIC/Projects/Diffusion_Image_Analysis/DTI_Software_and_Algorithm_Infrastructure|DTI Software Infrastructure]] project. The methods have been validated on a repeated scan of a healthy individual. This work has been published as a conference paper (MICCAI 2005) and a journal version (MEDIA 2006). Our recent IPMI 2007 paper includes a nonparametric regression method for analyzing data along a fiber tract.
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* Agreed on the scope of SlicerIGT: components for developers to rapidly prototype IGT applications.
 
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* Discussions about use cases and integration of modules into SlicerIGT. Modules need to be usable by other modules through public logic or MRML interface.
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* Agreed on common OpenIGTLink commands to control external tools from robots to ultrasound machines. The OpenIGTLinkRemote module will implement this function.
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* Website for non-developers: [http://www.slicerigt.org www.slicerigt.org]
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* Source code on Github: [https://github.com/slicerigt]
  
 
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##Built-in
 
##Built-in
 
##Extension -- commandline
 
##Extension -- commandline
##Extension -- loadable
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##Extension -- loadable YES
 
#Other (Please specify)
 
#Other (Please specify)
  

Latest revision as of 14:18, 21 June 2013

Home < 2013 Summer Project Week:SlicerIGT Extension

Key Investigators

  • Queen's: Tamas Ungi
  • BWH: Junichi Tokuda, Laurent Chauvin

Objective

Consolidate the SlicerIGT extension.

  • Make sure everything compiles on every platform.
  • Every module has documentation, and some example use cases or tests.
  • Discuss how to present individual contribution and collaboration at the same time (meeting with PIs).
  • Coordinate plans between groups.

Approach, Plan

  • Collect typical use cases.
  • Create simulated environment to test use cases offline.
  • Develop documentation and tutorials.
  • Use the Thursday morning meeting

Progress

  • Agreed on the scope of SlicerIGT: components for developers to rapidly prototype IGT applications.
  • Discussions about use cases and integration of modules into SlicerIGT. Modules need to be usable by other modules through public logic or MRML interface.
  • Agreed on common OpenIGTLink commands to control external tools from robots to ultrasound machines. The OpenIGTLinkRemote module will implement this function.
  • Website for non-developers: www.slicerigt.org
  • Source code on Github: [1]

Delivery Mechanism

This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)

  1. ITK Module
  2. Slicer Module
    1. Built-in
    2. Extension -- commandline
    3. Extension -- loadable YES
  3. Other (Please specify)

References