Difference between revisions of "2013 Summer Project Week:CMFReg"

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Image:PW-MIT2013.png|[[2013_Summer_Project_Week#Projects|Projects List]]
 
Image:PW-MIT2013.png|[[2013_Summer_Project_Week#Projects|Projects List]]
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Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
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Image:SkulbaseRegistration.png
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Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.
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Image:NonGrowingRegistration.png
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Image:GrowingRegistration.png
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Image:DownsizeImage.png
 
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==Key Investigators==
 
==Key Investigators==
 
* UNC/UofM: Vinicius Boen
 
* UNC/UofM: Vinicius Boen
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* UNC: Beatriz Paniagua
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* UofM: Lucia Cevidanes
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<h3>Objective</h3>
 
<h3>Objective</h3>
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The goals is to develop tools which will help the users on all the steps for a Cranio-maxillofacial registration by providing them image analysis, segmentation modification, mask creation and non-growing/growing registrations.
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The goal of this project is to develop a registration package oriented to the Dental Research community. The registration package will work as a user friendly package, easy to install via extension mechanism and easy to use. The registration package will perform superimposition using diverse Cranio-Maxillofacial CMF areas as stable regions of reference. This package provides several modules: mathematical operations on label maps, mask creation and non-growing/growing registrations.
 
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<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
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The plan is to
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The plan is to:
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* Unify tools already created on Slicer3
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* Modify them to compile on Slicer4 on all platforms
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* Find the best registration parameters that will be transparent for the user
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* Create an extension
  
 
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<h3>Progress</h3>
 
<h3>Progress</h3>
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The project is working as a CLI module on all 3 platforms and the parameters for Growing and NonGrowing patients were set. But it is not working as a extension yet.
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https://github.com/viboen/CMFreg
 
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==References==
 
==References==
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*Fletcher P, Tao R, Jeong W, Whitaker R. [http://www.na-mic.org/publications/item/view/634 A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.] Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.
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* Corouge I, Fletcher P, Joshi S, Gouttard S, Gerig G. [http://www.na-mic.org/publications/item/view/292 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Med Image Anal. 2006 Oct;10(5):786-98. PMID: 16926104.
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* [http://www.nitrc.org/plugins/mwiki/index.php/cmfreg:MainPage CMFReg page at the NITRC web site ]
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* Corouge I, Fletcher P, Joshi S, Gilmore J, Gerig G. [http://www.na-mic.org/publications/item/view/1122 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):131-9. PMID: 16685838.
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* [https://sites.google.com/a/umich.edu/dentistry-image-computing/home-1 Dental and Craniofacial Bionetwork for Image Analysis]
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* Goodlett C, Corouge I, Jomier M, Gerig G, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: http://hdl.handle.net/1926/39 .
 

Latest revision as of 14:49, 21 June 2013

Home < 2013 Summer Project Week:CMFReg

Key Investigators

  • UNC/UofM: Vinicius Boen
  • UNC: Beatriz Paniagua
  • UofM: Lucia Cevidanes


Objective

The goal of this project is to develop a registration package oriented to the Dental Research community. The registration package will work as a user friendly package, easy to install via extension mechanism and easy to use. The registration package will perform superimposition using diverse Cranio-Maxillofacial CMF areas as stable regions of reference. This package provides several modules: mathematical operations on label maps, mask creation and non-growing/growing registrations.

Approach, Plan

The plan is to:

  • Unify tools already created on Slicer3
  • Modify them to compile on Slicer4 on all platforms
  • Find the best registration parameters that will be transparent for the user
  • Create an extension

Progress

The project is working as a CLI module on all 3 platforms and the parameters for Growing and NonGrowing patients were set. But it is not working as a extension yet. https://github.com/viboen/CMFreg

Delivery Mechanism

This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)

  1. ITK Module
  2. Slicer Module
    1. Built-in
    2. Extension -- commandline
    3. Extension -- loadable YES
  3. Other (Please specify)

References

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