Difference between revisions of "DBP3:Utah:SlicerModuleAutoScar"

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(Created page with '__NOTOC__ ===CARMA Automatic Left Atrial Scar=== {| |thumb|280px|Automatic Left Atrial Scar |} == General Information == ===Module Type & Cat…')
 
 
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__NOTOC__
 
__NOTOC__
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===CARMA Automatic Left Atrial Scar===
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===CMR Toolkit Automatic Left Atrial Scar===
  
 
{|
 
{|
 
|[[Image:carma_afib_auto_scar.png|thumb|280px|Automatic Left Atrial Scar]]
 
|[[Image:carma_afib_auto_scar.png|thumb|280px|Automatic Left Atrial Scar]]
 
|}
 
|}
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==Authors, Collaborators & Contact==
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* CARMA Center, University of Utah: Alan Morris, Josh Cates, Rob MacLeod
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<div style="margin: 20px;">
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<div style="width: 27%; float: left; padding-right: 3%;">
  
 
== General Information ==
 
== General Information ==
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Type: CLI
 
Type: CLI
  
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Category: CARMA
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Category: Cardiac MRI Toolkit
  
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===Authors, Collaborators & Contact===
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</div>
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* Danny Perry: CARMA Center, University of Utah
 
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* Alan Morris: CARMA Center, University of Utah
 
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* Josh Cates: CARMA Center, University of Utah
 
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* Rob MacLeod: CARMA Center, University of Utah
 
  
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===Module Description===
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<div style="width: 27%; float: left; padding-right: 3%;">
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Determines Left Atrial Scar Automatically given the wall segmentation, in a post-ablation LGE-MRI. For details see: Perry, D. et al. "Automatic classification of scar tissue...", Proceedings of SPIE Medical Imaging: Computer Aided Diag\
 
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nosis, Feb 2012.
 
  
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==Module Description==
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This module determines left atrial scar automatically given the wall segmentation, in a post-ablation LGE-MRI. For details see: [http://healthsciences.utah.edu/carma/research/publications/pdf/automatic_lawall_scar_segmentation.pdf Perry, D. et al. "Automatic classification of scar tissue...", Proceedings of SPIE Medical Imaging: Computer Aided Diagnosis, Feb 2012.]
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</div>
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<div style="width: 40%; float: left;">
  
 
== Usage ==
 
== Usage ==
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* This module automatically classifies scar tissue in post ablation DE-MRIs
 
* This module automatically classifies scar tissue in post ablation DE-MRIs
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* [http://wiki.na-mic.org/Wiki/index.php?title=CARMA-LA-Scar_TutorialContestSummer2012 CARMA Automatic Left Atrial Scar Tutorial]
  
 
===Quick Tour of Features and Use===
 
===Quick Tour of Features and Use===
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The following are the inputs and outputs
 
The following are the inputs and outputs
  
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* MRI Image : Select the DE-MRI image
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* MRI image : Select the DE-MRI image
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* Wall mask : Select the label map for the left atrial wall
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* LA wall mask : Select the label map for the left atrial wall
 
* Blood Pool mask : Select the label map for the blood pool
 
* Blood Pool mask : Select the label map for the blood pool
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* Output : The output label map denoting scar
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* Result : The output label map denoting scar
  
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== Development ==
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</div>
  
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===Known bugs===
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<div>
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<div style="width: 27%; float: left; padding-right: 3%;">
  
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Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer bug tracker.
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== Development ==
  
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===Usability issues===
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===Source Code & Documentation===
  
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Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer bug tracker. Please select the '''usability issue category''' when browsing or contributing.
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The source code for this module can be found at the [https://github.com/carma-center/carma_slicer_extension/ GitHub repository].
  
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===Source code & documentation===
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</div>
  
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Customize following [http://www.na-mic.org/ViewVC/index.cgi/ links] for your module.
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<div style="width: 27%; float: left; padding-right: 3%;">
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[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Links] to documentation generated by doxygen.
 
  
 
== More Information ==  
 
== More Information ==  
  
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===Acknowledgment===
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===References===
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Include funding and other support here.
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[http://healthsciences.utah.edu/carma/research/publications/pdf/automatic_lawall_scar_segmentation.pdf Perry, D. et al. "Automatic classification of scar tissue...", Proceedings of SPIE Medical Imaging: Computer Aided Diagnosis, Feb 2012.]
  
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===References===
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</div>
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Publications related to this module go here. Links to pdfs would be useful.
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</div>

Latest revision as of 19:54, 29 July 2013

Home < DBP3:Utah:SlicerModuleAutoScar

CMR Toolkit Automatic Left Atrial Scar

Automatic Left Atrial Scar

Authors, Collaborators & Contact

  • CARMA Center, University of Utah: Alan Morris, Josh Cates, Rob MacLeod

General Information

Module Type & Category

Type: CLI

Category: Cardiac MRI Toolkit

Module Description

This module determines left atrial scar automatically given the wall segmentation, in a post-ablation LGE-MRI. For details see: Perry, D. et al. "Automatic classification of scar tissue...", Proceedings of SPIE Medical Imaging: Computer Aided Diagnosis, Feb 2012.

Usage

Examples, Use Cases & Tutorials

  • This module automatically classifies scar tissue in post ablation DE-MRIs

Quick Tour of Features and Use

The following are the inputs and outputs

  • MRI image : Select the DE-MRI image
  • LA wall mask : Select the label map for the left atrial wall
  • Blood Pool mask : Select the label map for the blood pool
  • Result : The output label map denoting scar

Development

Source Code & Documentation

The source code for this module can be found at the GitHub repository.

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