Difference between revisions of "DBP3:Utah:SlicerModuleConnectedThreshold"
From NAMIC Wiki
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
__NOTOC__ | __NOTOC__ | ||
| − | === | + | ===CMR Toolkit Isolated Connected Image Filter=== |
{| | {| | ||
| − | |[[Image:connectedThreshold.jpg|thumb|280px]] | + | |[[Image:connectedThreshold.jpg|thumb|280px|Left:Segmented Image, Center: Original Gated MRA Image]] |
|} | |} | ||
==Authors, Collaborators & Contact== | ==Authors, Collaborators & Contact== | ||
| − | * CARMA Center, University of Utah: | + | * CARMA Center, University of Utah: Salma Bengali, Alan Morris, Josh Cates, Rob MacLeod |
<div style="margin: 20px;"> | <div style="margin: 20px;"> | ||
| Line 17: | Line 17: | ||
Type: CLI | Type: CLI | ||
| − | Category: | + | Category: Cardiac MRI Tookit |
</div> | </div> | ||
| Line 24: | Line 24: | ||
==Module Description== | ==Module Description== | ||
| − | + | This module uses a single seed point to segment an image. The seed point (fiducial) is placed within the region to be segmented. The upper and lower thresholds are entered by the user. The segmented region will contain pixels that are connected to this seed, and lie in between this range. Multiple seed points can be used. | |
</div> | </div> | ||
| Line 32: | Line 32: | ||
===Examples, Use Cases & Tutorials=== | ===Examples, Use Cases & Tutorials=== | ||
| − | * | + | * This module is meant to be used for segmenting the entire endocardium region from a cardiac MRI or MRA image. It can also be used for segmentation of structures in other types of images. |
===Quick Tour of Features and Use=== | ===Quick Tour of Features and Use=== | ||
The following are the inputs and outputs | The following are the inputs and outputs | ||
| − | + | * Input image | |
| − | * | + | * Output image |
| + | * Lower threshold | ||
| + | * Upper threshold | ||
| + | * Seed/s: User placed fiducial/s inside the region to be segmented | ||
</div> | </div> | ||
| Line 56: | Line 59: | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
| − | |||
</div> | </div> | ||
</div> | </div> | ||
Latest revision as of 19:55, 29 July 2013
Home < DBP3:Utah:SlicerModuleConnectedThresholdCMR Toolkit Isolated Connected Image Filter
Authors, Collaborators & Contact
- CARMA Center, University of Utah: Salma Bengali, Alan Morris, Josh Cates, Rob MacLeod
General Information
Module Type & Category
Type: CLI
Category: Cardiac MRI Tookit
Module Description
This module uses a single seed point to segment an image. The seed point (fiducial) is placed within the region to be segmented. The upper and lower thresholds are entered by the user. The segmented region will contain pixels that are connected to this seed, and lie in between this range. Multiple seed points can be used.
Usage
Examples, Use Cases & Tutorials
- This module is meant to be used for segmenting the entire endocardium region from a cardiac MRI or MRA image. It can also be used for segmentation of structures in other types of images.
Quick Tour of Features and Use
The following are the inputs and outputs
- Input image
- Output image
- Lower threshold
- Upper threshold
- Seed/s: User placed fiducial/s inside the region to be segmented
Development
Source code & documentation
The source code for this module can be found at the GitHub repository.
