Difference between revisions of "Mbirn:SpringConference2007"

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<br/>
 
<br/>
 
<br/>
 
<br/>
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days.  Contact  
+
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days.  Contact  
 
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.
 
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.
 
<br/>
 
<br/>
Line 17: Line 17:
 
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/>
 
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/>
  
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (across the street from the hotel).
+
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA
 +
(617) 542-3456; across the street from the hotel).
 
<br/>
 
<br/>
 
<br/>
 
<br/>
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'''Wednesday (3/21) '''  ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/>
 
'''Wednesday (3/21) '''  ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/>
The conference room is on the second floor, room 245, and the phone number
+
The conference room is on the second floor, room 245. There will be someone
there is 617-525-6224. Once you arrive downstairs call extension 56224 and
+
at the door to let you in as the door is secured.
someone can come and let you in.
 
 
 
 
*Morning <br/>
 
*Morning <br/>
 
Breakfast: 8AM <br/>
 
Breakfast: 8AM <br/>
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Data Repository Update - Chris Fennema-Notestine <br/>
 
Data Repository Update - Chris Fennema-Notestine <br/>
 
(5 minute presentations + time for discussion/questions)<br/>
 
(5 minute presentations + time for discussion/questions)<br/>
Portal Update - Jeff Grethe, Mark James <br/>
+
Portal Update - Jeff Grethe [[media:CollaborativePortal.pdf | slides]];<br/>
Applications Update: Steve Pieper (Slicer 3); Nick Schmansky (Query Tool Front End to FreeSurfer) <br/>
+
Applications Update: Steve Pieper (Slicer 3) [[media:Slicer3-update-2007-03-21.ppt | slides]]; Nick Schmansky (QDEC: a Freesurfer group-analysis GUI tool) <br/>
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/>
+
Workflows Update: R. Jagadeeswaran (LONI) [[media:Jags_mbirnAHM_March_2007.ppt | slides]]; Shawn Murphy (MGH) [[media:Murphy_workflow_AHM.ppt | slides]]; <br/>
Databases Update - Dan Marcus (XNAT) <br/> <br/>
+
Databases Update - Dan Marcus (XNAT) [[media:AHM_XNAT_Overview.ppt | slides]];<br/> <br/>
  
 +
''Lunch (12-1:00PM)'' <br/><br/>
 +
*Afternoon (1-4PM) <br/>
 
Discussion of the agenda for Wednesday and Thursday <br/>
 
Discussion of the agenda for Wednesday and Thursday <br/>
 
Move to Breakout Groups <br/> <br/>
 
Move to Breakout Groups <br/> <br/>
 
+
XNAT + FreeSurfer, XML representation: Dan M, Dave K, Jeff G, Nicole A, Bruce F<br/>
''Lunch (12-1:00PM)'' <br/><br/>
+
Workflow Workbench / Eclipse plug-in: Mike M, Brian B, Ramil M, Gelnn H, Evan M, Ding Ying W, Mohana R, Tim O <br/>
*Afternoon (1-4PM) <br/>
 
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/>
 
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/>
 
 
<br/>
 
<br/>
 
*Evening (at Radisson) <br/>
 
*Evening (at Radisson) <br/>
 
Cocktail Reception (@5:30 PM) <br/>
 
Cocktail Reception (@5:30 PM) <br/>
Site Update Presentations (@6:00PM) <br/>
+
Site Update Presentations (@6:00PM) [[media:MBIRN-BWH-Environment-2007-03-21.ppt | slides about the BWH environment]]  <br/>
 
Dinner (@7:00 PM) <br/> <br/>
 
Dinner (@7:00 PM) <br/> <br/>
  
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*Morning <br/>
 
*Morning <br/>
 
Breakfast 7:30-8:30 <br/>
 
Breakfast 7:30-8:30 <br/>
Introduction – Bruce Rosen <br/> <br/>
+
Introduction – Bruce Rosen <br/>
Chris Fennema-Notestine – update from Data Repository Director <br/><br/>
+
Chris Fennema-Notestine – update from Data Repository Director <br/> <br/>
 
 
 
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/>
 
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/>
Workflows Working Group-demonstrations of the LDDMM and LONI pipelines <br/>
+
'''9:30-12:00''' <br/>
 +
Workflows / Portal Working Group - working time + demonstrations of the LDDMM, LONI pipelines and Eclipse-based workflow demonstration<br/>
 
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/>
 
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/>
Upload Working Group<br/>
 
 
Visualization and Analysis Working Group <br/>
 
Visualization and Analysis Working Group <br/>
 +
DTI Working Session ''(DTI session will begin with 5 minute updates from each participating site)'' <br/>
 
<br/>
 
<br/>
A parallel DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) will run throughout Thursday. <br/>
+
''DTI session will begin with 5 minute updates from each participating site'' <br/>
 
 
 
 
''Lunch 12-2PM'' <br/>
 
''Lunch 12-2PM'' <br/>
 
Operations Committee Lunch 12-1 PM <br/> <br/>
 
Operations Committee Lunch 12-1 PM <br/> <br/>
  
*Afternoon (2-5PM) <br/>
+
*Afternoon (2-3:15PM) <br/>
 
DTI Working Session <br/>
 
DTI Working Session <br/>
Workflows Working Session <br/>
+
Applications (Requirments Gathering for web services to support APIs) <br/>
XCEDE /Query Atlas groups (includes provenance group)
+
:Visualization (Dan M, Steve P, Matt M, FreeSurfer rep)
Upload Working Session <br/>
+
:XNAT and QDEC (Tim O, FreeSurfer rep)
Databases Working Session <br/>
+
:Provenance (Mohana, Nicole A)
 +
<br/>
 +
*Afternoon (3:30-5:00PM) <br/>
 +
Development of common web services to support applications <br/>  
 +
Definition of "mBIRN ver. 1" <br/>
  
 
*Evening <br/>
 
*Evening <br/>
6:30 pm - Dinner at Maggiano's Little Italy (4 Columbus Ave, Boston, MA
+
6:30 pm - Dinner at [http://www.google.com/maps?hl=en&safe=off&q=maggiano%27s+little+italy&near=Boston,+MA&cid=0,0,1768425890215287899&ll=42.351418,-71.068375&spn=0,.02&sa=X&oi=local&ct=image Maggiano's Little Italy] (4 Columbus Ave, Boston, MA
 
(617) 542-3456; across the street from the hotel) <br/> <br/>
 
(617) 542-3456; across the street from the hotel) <br/> <br/>
  
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*Morning <br/>
 
*Morning <br/>
 
Breakfast (7:30-8:30) <br/>
 
Breakfast (7:30-8:30) <br/>
 +
Opening Remarks - Bruce Rosen <br/>
 
Opening Remarks - Greg Farber <br/>
 
Opening Remarks - Greg Farber <br/>
Opening Remarks II - Bruce Rosen <br/>
+
Introduction of the Clinical Collaborators - Representatives <br/>
Overview for each Working Group <br/>
+
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group, NIDA funded Pediatric Imaging Studies.
 +
<br/>  
 +
Overview for each Working Group- Dan Marcus, Steve Pieper, Jeff Grethe, Nicole Aucoin, Karl Helmer <br/>
 
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/>
 
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/>
Introduction of the Clinical Collaborators - Representatives <br/>
+
<br/>
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.
 
<br/> <br/>
 
  
 
''Lunch (12-1:30PM)'' <br/> <br/>
 
''Lunch (12-1:30PM)'' <br/> <br/>
  
*Afternoon (1:30-4PM <br/>
+
*Afternoon (1:30-4PM) <br/>
 
Wrap up Session – Discussion of what Morphometry can deliver in the one and  
 
Wrap up Session – Discussion of what Morphometry can deliver in the one and  
 
two year timeframes.  Incorporation of feedback and needs of the clinical  
 
two year timeframes.  Incorporation of feedback and needs of the clinical  
Line 104: Line 105:
 
<br/>
 
<br/>
 
<br/>
 
<br/>
 +
  
 
== ATTENDEES ==
 
== ATTENDEES ==
 
<br/>
 
<br/>
MGH:    B. Rosen, R. Gollub, K. Helmer, S.Murphy
+
MGH:    B. Rosen, R. Gollub, K. Helmer, S.Murphy, D. Greve, D. Kennedy, M. Mendis, R. Buckner, N.Schmansky, S. Wallace, B. Fischl, G. Hoffman
 
<br/>
 
<br/>
BWH:    N. Aucoin, K. Hayes, S. Pieper, R. Kikinis
+
BWH:    N. Aucoin, K. Hayes, S. Pieper, R. Kikinis, W. Plesniak
 
<br/>
 
<br/>
 
MIT:    P.Golland
 
MIT:    P.Golland
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WashU:  D. Marcus, T.Olsen, M. Ramaratnam, K. Archie
 
WashU:  D. Marcus, T.Olsen, M. Ramaratnam, K. Archie
 
<br/>
 
<br/>
JHU:    T. Brown, J.Hennesey, A. Kolasny
+
JHU:    T. Brown, J.Hennesey, A. Kolasny, M. Miller, S. Mori, B. Landman, A. Qui
 
<br/>
 
<br/>
Duke:  A. Song, B. Boyd, J. MacFall, K. Zhao
+
Duke:  A. Song, J. MacFall, B. Boyd, K. Zhao
 
<br/>  
 
<br/>  
UCLA:  A. Toga
+
UCLA:  A. Toga, R. Jagadeeswaran
 
<br/>
 
<br/>
 
UCSD:  A. Dale, C. Fennema-Notestine
 
UCSD:  A. Dale, C. Fennema-Notestine
 
<br/>
 
<br/>
UCI:    S. Potkin, J.Turner, Dingying Wei
+
UCI:    J. Ames, S. Potkin, J.Turner, D. Wei, D. Keator, J. Fallon, A. Preda
 
<br/>
 
<br/>
BIRN CC: M. James
+
BIRN CC: M. James, J. Grethe, V. Astakhov, R. Manansala, N. Jones
 
<br/>
 
<br/>
 
NIH:    E.Collier
 
NIH:    E.Collier
 
<br/>
 
<br/>
NA-MIC:  
+
Other Collaborators: B. Gimi (Children's)
 +
<br/>
 +
NIH CIT:  M. McAulliffe, E. McCreedy<br/>
 
<br/>
 
<br/>
Other Collaborators:
+
Friday’s clinical collaborator round table discussion:<br/>
 +
M. McAulliffe (NDAR)<br/>
 +
G. Harris, O. Wu (SPOTRIAS)<br/>
 +
P. Wolf, R. Killany, C.  (Framingham Heart Study)<br/>
 +
F. LaLonde (NIMH)<br/>
 +
B. Kosofsky (NIDA)<br/>

Latest revision as of 14:45, 23 March 2007

Home < Mbirn:SpringConference2007

Morphometry BIRN All Hands Meeting - 2007


Location: Boston, MA
Date: March 21-23, 2007
Venue: Radisson Boston

Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.

There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.

We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.

There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA (617) 542-3456; across the street from the hotel).

Sessions for AHM:

Wednesday (3/21) Note: this session takes place at 1249 Boylston Street
The conference room is on the second floor, room 245. There will be someone at the door to let you in as the door is secured.

  • Morning

Breakfast: 8AM
Start: 8:30 AM
Topic 1: Where are we and where are we going?
Introduction / Goals of the Meeting - Randy Gollub
Data Repository Update - Chris Fennema-Notestine
(5 minute presentations + time for discussion/questions)
Portal Update - Jeff Grethe slides;
Applications Update: Steve Pieper (Slicer 3) slides; Nick Schmansky (QDEC: a Freesurfer group-analysis GUI tool)
Workflows Update: R. Jagadeeswaran (LONI) slides; Shawn Murphy (MGH) slides;
Databases Update - Dan Marcus (XNAT) slides;

Lunch (12-1:00PM)

  • Afternoon (1-4PM)

Discussion of the agenda for Wednesday and Thursday
Move to Breakout Groups

XNAT + FreeSurfer, XML representation: Dan M, Dave K, Jeff G, Nicole A, Bruce F
Workflow Workbench / Eclipse plug-in: Mike M, Brian B, Ramil M, Gelnn H, Evan M, Ding Ying W, Mohana R, Tim O

  • Evening (at Radisson)

Cocktail Reception (@5:30 PM)
Site Update Presentations (@6:00PM) slides about the BWH environment
Dinner (@7:00 PM)


Thursday (3/22)

  • Morning

Breakfast 7:30-8:30
Introduction – Bruce Rosen
Chris Fennema-Notestine – update from Data Repository Director

Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:
9:30-12:00
Workflows / Portal Working Group - working time + demonstrations of the LDDMM, LONI pipelines and Eclipse-based workflow demonstration
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group)
Visualization and Analysis Working Group
DTI Working Session (DTI session will begin with 5 minute updates from each participating site)

Lunch 12-2PM
Operations Committee Lunch 12-1 PM

  • Afternoon (2-3:15PM)

DTI Working Session
Applications (Requirments Gathering for web services to support APIs)

Visualization (Dan M, Steve P, Matt M, FreeSurfer rep)
XNAT and QDEC (Tim O, FreeSurfer rep)
Provenance (Mohana, Nicole A)


  • Afternoon (3:30-5:00PM)

Development of common web services to support applications
Definition of "mBIRN ver. 1"

  • Evening

6:30 pm - Dinner at Maggiano's Little Italy (4 Columbus Ave, Boston, MA (617) 542-3456; across the street from the hotel)

Friday (3/23)

  • Morning

Breakfast (7:30-8:30)
Opening Remarks - Bruce Rosen
Opening Remarks - Greg Farber
Introduction of the Clinical Collaborators - Representatives
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group, NIDA funded Pediatric Imaging Studies.
Overview for each Working Group- Dan Marcus, Steve Pieper, Jeff Grethe, Nicole Aucoin, Karl Helmer
Introduction to the BIRN Data Repository - Christine Fennema-Notestine

Lunch (12-1:30PM)

  • Afternoon (1:30-4PM)

Wrap up Session – Discussion of what Morphometry can deliver in the one and two year timeframes. Incorporation of feedback and needs of the clinical collaborators.
Action Items
Finish @ 4pm


ATTENDEES


MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy, D. Greve, D. Kennedy, M. Mendis, R. Buckner, N.Schmansky, S. Wallace, B. Fischl, G. Hoffman
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis, W. Plesniak
MIT: P.Golland
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie
JHU: T. Brown, J.Hennesey, A. Kolasny, M. Miller, S. Mori, B. Landman, A. Qui
Duke: A. Song, J. MacFall, B. Boyd, K. Zhao
UCLA: A. Toga, R. Jagadeeswaran
UCSD: A. Dale, C. Fennema-Notestine
UCI: J. Ames, S. Potkin, J.Turner, D. Wei, D. Keator, J. Fallon, A. Preda
BIRN CC: M. James, J. Grethe, V. Astakhov, R. Manansala, N. Jones
NIH: E.Collier
Other Collaborators: B. Gimi (Children's)
NIH CIT: M. McAulliffe, E. McCreedy

Friday’s clinical collaborator round table discussion:
M. McAulliffe (NDAR)
G. Harris, O. Wu (SPOTRIAS)
P. Wolf, R. Killany, C. (Framingham Heart Study)
F. LaLonde (NIMH)
B. Kosofsky (NIDA)