Difference between revisions of "2014 Project Week:WMQLExtension"
From NAMIC Wiki
| Line 34: | Line 34: | ||
[[File:WMQLModuleSampleOutput.png||1000px]] | [[File:WMQLModuleSampleOutput.png||1000px]] | ||
| + | |||
| + | [[File:WMQLModuleSampleOutput2.png]] | ||
</div> | </div> | ||
</div> | </div> | ||
Revision as of 00:16, 10 January 2014
Home < 2014 Project Week:WMQLExtension
Key Investigators
- MGH: Lichen Liang
- BWH: Peter Savadjiev, Lauren O'Donnell, Steve Pieper
Project Description
Objective
Work towards creating a Slicer4 extension for the white matter query language, originally developed by Demian Wassermann.
Approach, Plan
We currently have the WMQL as a python scripted module. We need to resolve several issues:
- how to incorporate dependencies, such as numpy 1.7.
- extend the user interface
- create documentation
- create Slicer 4 extension
Progress
- The major technical hurdle that remains to be solved before creating a Slicer extension is the code's dependency on numpy 1.7. A long-term solution would be to update Slicer to work with numpy 1.7.
- In the meantime, we have a working prototype for a Slicer module that works if numpy 1.7 is manually installed. The source code is available in a github repository: https://github.com/llcmgh/slicer_tract_querier
- Sample output:
