Difference between revisions of "2014 Project Week:WMQLExtension"
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* The major technical hurdle that remains to be solved before creating a Slicer extension is the code's dependency on numpy 1.7. A long-term solution would be to update Slicer to work with numpy 1.7. | * The major technical hurdle that remains to be solved before creating a Slicer extension is the code's dependency on numpy 1.7. A long-term solution would be to update Slicer to work with numpy 1.7. | ||
* In the meantime, we have a working prototype for a Slicer module that works if numpy 1.7 is manually installed. The source code is available in a github repository: https://github.com/llcmgh/slicer_tract_querier | * In the meantime, we have a working prototype for a Slicer module that works if numpy 1.7 is manually installed. The source code is available in a github repository: https://github.com/llcmgh/slicer_tract_querier | ||
| − | * | + | * Overall view with initial full set of fiber tract and user interface: |
| − | [[File:WMQLModuleSampleOutput.png]] | + | [[File:WMQLModuleSampleOutput.png||1000px]] |
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| + | * Zoom-in on the user interface, with the window to enter the WMQL command: | ||
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| + | [[File:WMQLModuleSampleOutput1.png||500px]] | ||
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| + | * Extracted fibers overlaid on initial full set of fibers: | ||
| + | |||
| + | [[File:WMQLModuleSampleOutput2.png||800px]] | ||
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Latest revision as of 00:21, 10 January 2014
Home < 2014 Project Week:WMQLExtension
Key Investigators
- MGH: Lichen Liang
- BWH: Peter Savadjiev, Lauren O'Donnell, Steve Pieper
Project Description
Objective
Work towards creating a Slicer4 extension for the white matter query language, originally developed by Demian Wassermann.
Approach, Plan
We currently have the WMQL as a python scripted module. We need to resolve several issues:
- how to incorporate dependencies, such as numpy 1.7.
- extend the user interface
- create documentation
- create Slicer 4 extension
Progress
- The major technical hurdle that remains to be solved before creating a Slicer extension is the code's dependency on numpy 1.7. A long-term solution would be to update Slicer to work with numpy 1.7.
- In the meantime, we have a working prototype for a Slicer module that works if numpy 1.7 is manually installed. The source code is available in a github repository: https://github.com/llcmgh/slicer_tract_querier
- Overall view with initial full set of fiber tract and user interface:
- Zoom-in on the user interface, with the window to enter the WMQL command:
- Extracted fibers overlaid on initial full set of fibers:
