Difference between revisions of "2015 Winter Project Week:OpenAtlas"
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<h3>Progress</h3> | <h3>Progress</h3> | ||
| + | Before Project Week | ||
* Pilot project atlas is the [https://nac.spl.harvard.edu/index.html Neuro Image Analysis Center]'s [http://nac.spl.harvard.edu/publications/item/view/2037 Multi-modality MRI-based Atlas of the Brain] | * Pilot project atlas is the [https://nac.spl.harvard.edu/index.html Neuro Image Analysis Center]'s [http://nac.spl.harvard.edu/publications/item/view/2037 Multi-modality MRI-based Atlas of the Brain] | ||
* Established a [https://github.com/lorensen/OpenAtlas github repository] | * Established a [https://github.com/lorensen/OpenAtlas github repository] | ||
* Developed several tools and scripts to process the atlas | * Developed several tools and scripts to process the atlas | ||
| − | * Edited several structures to exercise the tools | + | * Edited several structures with [http://slicer.org/ Slicer] to exercise the tools |
* Created a [http://my.cdash.org/index.php?project=OpenAtlas CDash dashboard] | * Created a [http://my.cdash.org/index.php?project=OpenAtlas CDash dashboard] | ||
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Revision as of 18:13, 24 December 2014
Home < 2015 Winter Project Week:OpenAtlas
Adjacency display for corpus callosum
Difference display for pons
Key Investigators
- Bill Lorensen (Noware)
Project Description
Objective
- Provide tools and techniques to support community-driven anatomy atlas editing and curating.
Approach, Plan
Adapt extreme testing techniques used for software development to manage changes to anatomy atlases.
- Define procedures and policies to support atlas development
- Maintain a github repository to hold
- Image atlases
- Software tools to create models and check atlases for consistency
- Cube and STL models for anatomy structures
- Statistics for anatomy structures
- Displays of changes in strutures
- Displays of structure adjacencies
- Create a CDash dashboard to track changes in the atlases
Progress
Before Project Week
- Pilot project atlas is the Neuro Image Analysis Center's Multi-modality MRI-based Atlas of the Brain
- Established a github repository
- Developed several tools and scripts to process the atlas
- Edited several structures with Slicer to exercise the tools
- Created a CDash dashboard
